BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1443204 =	100 (1.020)	7 (0.110) +CAACGAGCTGTACATTATAAAATACATATC	6/100	NT	10.1%	coding (224/393 nt)	USA300TCH1516_01342	hypothetical protein
*	?	USA300TCH1516_ALE	1803072 =	NA (NA)	7 (0.110) +CAACGAGCTGTACATTATAAAATACATATC	6/100	NT	10.1%	coding (796/807 nt)	USA300HOU_RS12765	hypothetical protein

Only 100 of 127 total aligned reads displayed.

CCCAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATA  >  USA300TCH1516_ALE/1443115‑1443294

cccAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATcaca                                                                                           >  1:1895554/1‑91 (MQ=39)

 ccAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACAt                                                                                          <  1:2359210/91‑1 (MQ=38)

 ccAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACAt                                                                                          <  1:2357331/91‑1 (MQ=39)

 ccAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACAt                                                                                          >  1:752345/1‑91 (MQ=39)

 ccAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACAt                                                                                          <  1:2714339/91‑1 (MQ=39)

  cAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACAtt                                                                                         >  1:3827355/1‑91 (MQ=39)

  cAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACAtt                                                                                         >  1:1463516/1‑91 (MQ=39)

  cAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATCTCTCAAAGAACATGATGAACAGTCATCACAtt                                                                                         >  1:3529447/1‑91 (MQ=255)

   aaTTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTc                                                                                        >  1:2431663/1‑91 (MQ=39)

    aTTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCa                                                                                       <  1:1642605/91‑1 (MQ=39)

    aTTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCa                                                                                       <  1:2553751/91‑1 (MQ=39)

      tataATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCata                                                                                     <  1:2136304/91‑1 (MQ=39)

      tataATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCata                                                                                     <  1:4023763/91‑1 (MQ=39)

       ataATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCatat                                                                                    >  1:1548041/1‑91 (MQ=39)

          aTTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGc                                                                                 >  1:2308560/1‑91 (MQ=40)

          aTTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGc                                                                                 <  1:2053294/91‑1 (MQ=40)

           ttcttcATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATCCATATAGCt                                                                                >  1:3722763/1‑91 (MQ=255)

            tcttcATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCtt                                                                               <  1:61693/91‑1 (MQ=255)

             cttcATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTg                                                                              >  1:910854/1‑91 (MQ=255)

                cATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAg                                                                           <  1:477445/91‑1 (MQ=255)

                 aTAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGt                                                                          >  1:1492029/1‑91 (MQ=255)

                 aTAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGt                                                                          <  1:3780339/91‑1 (MQ=255)

                 aTAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGt                                                                          <  1:3609215/91‑1 (MQ=255)

                  tAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTc                                                                         <  1:1036688/91‑1 (MQ=255)

                  tAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTc                                                                         <  1:951685/91‑1 (MQ=40)

                   aaTTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCa                                                                        <  1:2109889/91‑1 (MQ=255)

                     ttttCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACg                                                                      <  1:2945129/91‑1 (MQ=255)

                       atttctatcaaataattaatagaaatcagcttttttgatatgtattttataatgtacagctcgttgCATTCATATAGCTTGAAGTCACGtt                                                                    <  1:1995070‑M1/25‑1 (MQ=255)

                       atttctatcaaataattaatagaaatcagcttttttgatatgtattttataatgtacagctcgttgCATTCATATAGCTTGAAGTCACGtt                                                                    <  1:3388291‑M1/25‑1 (MQ=255)

                            tatcaaataattaatagaaatcagcttttttgatatgtattttataatgtacagctcgttgCATTCATATAGCTTGAAGTCACGTTTaaaa                                                               <  1:588703‑M1/30‑1 (MQ=255)

                            aTTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTaaaa                                                               <  1:2504692/91‑1 (MQ=255)

                            aTTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTaaaa                                                               >  1:501288/1‑91 (MQ=255)

                            aTTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTaaaa                                                               >  1:3983764/1‑91 (MQ=255)

                            aTTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTaaaa                                                               >  1:1030503/1‑91 (MQ=255)

                             ttGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAAc                                                              <  1:2727413/91‑1 (MQ=255)

                             ttGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAAc                                                              <  1:975718/91‑1 (MQ=255)

                             atcaaataattaatagaaatcagcttttttgatatgtattttataatgtacagctcgttgCATTCATATAGCTTGAAGTCACGTTTAAAAc                                                              <  1:3004690‑M1/31‑1 (MQ=255)

                               caaataattaatagaaatcagcttttttgatatgtattttataatgtacagctcgttgCATTCATATAGCTTGAAGTCACGTTTAAaacca                                                            <  1:1161468‑M1/33‑3 (MQ=255)

                                gATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACtat                                                           >  1:3121988/1‑91 (MQ=255)

                                gATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACtat                                                           >  1:3121795/1‑91 (MQ=255)

                                gATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACtat                                                           >  1:3121773/1‑91 (MQ=255)

                                 aTTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACtata                                                          >  1:2556808/1‑91 (MQ=255)

                                  tttCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTatat                                                         >  1:1003735/1‑91 (MQ=255)

                                    tCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTAtatct                                                       <  1:194047/91‑1 (MQ=255)

                                     cGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTAtatcta                                                      <  1:2299676/91‑1 (MQ=255)

                                     cGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTAtatcta                                                      <  1:786406/91‑1 (MQ=255)

                                     cGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTAtatcta                                                      <  1:142853/91‑1 (MQ=255)

                                     cGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTAtatcta                                                      <  1:2021068/91‑1 (MQ=255)

                                      gAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTAtatctat                                                     >  1:3751093/1‑91 (MQ=255)

                                        aTTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCa                                                   >  1:1242251/1‑91 (MQ=255)

                                            ggCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTAc                                               >  1:2952971/1‑91 (MQ=255)

                                             gCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACg                                              >  1:3417254/1‑91 (MQ=255)

                                               ttCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGt                                            >  1:2550907/1‑91 (MQ=255)

                                               ttCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGt                                            >  1:2550598/1‑91 (MQ=255)

                                                    gCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCa                                       <  1:344801/91‑1 (MQ=255)

                                                    gCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCa                                       >  1:2472461/1‑91 (MQ=255)

                                                    gCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCa                                       <  1:344753/91‑1 (MQ=255)

                                                     cATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCat                                      <  1:2092080/91‑1 (MQ=255)

                                                     cATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCat                                      <  1:3449609/91‑1 (MQ=255)

                                                     cATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCat                                      <  1:2576751/91‑1 (MQ=255)

                                                       ttGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCatat                                    <  1:4012626/91‑1 (MQ=255)

                                                       ttGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCatat                                    <  1:4012565/91‑1 (MQ=255)

                                                       ttGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCatat                                    <  1:4012727/91‑1 (MQ=255)

                                                       ttGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCatat                                    >  1:3445869/1‑91 (MQ=255)

                                                       ttGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCatat                                    >  1:1723020/1‑91 (MQ=255)

                                                        tGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATc                                   >  1:2376945/1‑91 (MQ=255)

                                                          aTGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCtt                                 <  1:3011890/91‑1 (MQ=255)

                                                             tctcAAAGAACATGATGTACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTa                              <  1:3551565/91‑1 (MQ=255)

                                                             tctcAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTa                              <  1:4150285/91‑1 (MQ=255)

                                                               tcAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTaaa                            >  1:356325/1‑91 (MQ=255)

                                                               tcAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTaaa                            >  1:396955/1‑91 (MQ=255)

                                                                cAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTaaaa                           >  1:1804598/1‑91 (MQ=255)

                                                                  aaGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAAcc                         <  1:1551407/91‑1 (MQ=40)

                                                                  aaGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAAcc                         <  1:2253797/91‑1 (MQ=255)

                                                                   aGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCt                        >  1:1190790/1‑91 (MQ=255)

                                                                   aGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCt                        >  1:1190883/1‑91 (MQ=255)

                                                                   aGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCt                        >  1:1190882/1‑91 (MQ=255)

                                                                     aaCATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTAt                      <  1:2498491/91‑1 (MQ=255)

                                                                      aCATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTAtt                     >  1:3936710/1‑91 (MQ=255)

                                                                       cATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAGCTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTc                    >  1:4141727/1‑91 (MQ=255)

                                                                       cATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTCTTc                    >  1:3217870/1‑91 (MQ=255)

                                                                        atgatgAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCt                   >  1:1429578/1‑91 (MQ=255)

                                                                        atgatgAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCt                   >  1:433342/1‑91 (MQ=255)

                                                                        atgatgAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCt                   <  1:2741946/91‑1 (MQ=255)

                                                                         tgatgaACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCtt                  >  1:172675/1‑91 (MQ=255)

                                                                         tgatgaACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCtt                  >  1:478565/1‑91 (MQ=255)

                                                                         tgatgaACAGTCAGCACATTCATATAGCTTGAAGTCACGTTTAGAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCtt                  <  1:4154431/91‑1 (MQ=255)

                                                                          gatgaACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCttt                 >  1:3423774/1‑91 (MQ=255)

                                                                            tgaACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTg               >  1:2601157/1‑91 (MQ=255)

                                                                                 aGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGttatt          >  1:1424635/1‑91 (MQ=255)

                                                                                  gTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGttatta         >  1:811813/1‑91 (MQ=255)

                                                                                    catcaCATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAgg       >  1:842645/1‑91 (MQ=255)

                                                                                    catcaCATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAgg       <  1:2190621/91‑1 (MQ=255)

                                                                                      tcaCATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGAc     <  1:60480/91‑1 (MQ=255)

                                                                                       cacaTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACa    <  1:1527286/91‑1 (MQ=255)

                                                                                       cacaTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACa    <  1:1528037/91‑1 (MQ=40)

                                                                                       cacaTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACa    <  1:2577591/91‑1 (MQ=255)

                                                                                       cacaTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACa    <  1:2741241/91‑1 (MQ=255)

                                                                                        acaTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACat   >  1:1625587/1‑91 (MQ=39)

                                                                                         caTTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACata  <  1:475932/91‑1 (MQ=39)

CCCAATTATAATTCTTCATAATTTTCTTATTGGATTTCGAATTTGGCTTCATGCATTGATGTCTCAAAGAACATGATGAACAGTCATCACATTCATATAGCTTGAAGTCACGTTTAAAACTATATCTATCATTACGGTATGCATATCTTTTAAAACCTATTCTTTTGTTATTAGGACATA  >  USA300TCH1516_ALE/1443115‑1443294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.