New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1662000 =117 (1.190)24 (0.290) 10/136 NT 21.7% intergenic (‑87/+68) USA300HOU_RS08275/rpmG2_2 5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2
?USA300TCH1516_ALE 1662039 = 74 (0.890)intergenic (‑126/+29) USA300HOU_RS08275/rpmG2_2 5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2

Only 100 of 188 total aligned reads displayed.

TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTAAAG  >  USA300TCH1516_ALE/1661910‑1662090
                                                                                          |                                                                                          
tCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTa                                                                                            >  1:221124/1‑91 (MQ=255)
tCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTa                                                                                            >  1:3240477/1‑91 (MQ=255)
tCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTa                                                                                            >  1:2925629/1‑91 (MQ=255)
 cATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaa                                                                                           >  1:209568/1‑91 (MQ=255)
 cATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaa                                                                                           >  1:2059722/1‑91 (MQ=255)
 cATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaa                                                                                           <  1:119711/91‑1 (MQ=255)
  aaatgaagaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataaaa                                                                                          <  1:2878080‑M1/3‑1 (MQ=255)
  aTTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaaa                                                                                          <  1:2399826/91‑1 (MQ=255)
   ttATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaaaa                                                                                         <  1:2319595/91‑1 (MQ=255)
   ttATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaaaa                                                                                         <  1:3113400/91‑1 (MQ=255)
    atgaagaaattctgttcacgttaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataaaaaa                                                                                        >  1:3524746‑M1/87‑91 (MQ=255)
    atgaagaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataaaaaa                                                                                        <  1:439257‑M1/5‑1 (MQ=255)
      tgttgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAgg                                                                                      <  1:1607553/91‑1 (MQ=255)
      gaagaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAgg                                                                                      <  1:1553959‑M1/7‑1 (MQ=255)
       gttgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGt                                                                                     >  1:2154402/1‑91 (MQ=255)
       aagaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGt                                                                                     >  1:2240447‑M1/84‑91 (MQ=255)
       aagaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGt                                                                                     >  1:2473710‑M1/84‑91 (MQ=255)
       aagaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGt                                                                                     <  1:114708‑M1/8‑1 (MQ=255)
        ttgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTg                                                                                    >  1:2792367/1‑91 (MQ=255)
        agaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTg                                                                                    >  1:2843799‑M1/83‑91 (MQ=255)
        agaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTg                                                                                    >  1:2843717‑M1/83‑91 (MQ=255)
         tgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGa                                                                                   >  1:54576/1‑91 (MQ=255)
         gaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacagaataatcattaaaattaaatttaaattaacaataAAAAAGGTGa                                                                                   <  1:3300978‑M1/10‑1 (MQ=255)
         gaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGa                                                                                   <  1:2316991‑M1/10‑1 (MQ=255)
          aaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGaa                                                                                  >  1:3779725‑M1/81‑91 (MQ=255)
          aaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGaa                                                                                  <  1:1849682‑M1/11‑1 (MQ=255)
           aattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGaaa                                                                                 >  1:1854108‑M1/80‑91 (MQ=255)
            cATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAAc                                                                                >  1:3453356/1‑91 (MQ=255)
             atgatgAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAAcc                                                                               <  1:1149905/91‑1 (MQ=255)
              tgatgaATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACct                                                                              <  1:2338883/91‑1 (MQ=255)
              tgatgaATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACct                                                                              <  1:1109225/91‑1 (MQ=255)
              tgatgaATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACct                                                                              <  1:116800/91‑1 (MQ=255)
               gatgaATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACctc                                                                             <  1:3392295/91‑1 (MQ=255)
                 tgaATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCtt                                                                           <  1:1013568/91‑1 (MQ=255)
                   aaTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAt                                                                         >  1:1787908/1‑91 (MQ=255)
                    aTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtt                                                                        <  1:2204212/91‑1 (MQ=255)
                    aTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtt                                                                        >  1:1743209/1‑91 (MQ=255)
                      tATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTGTCATTTCATACGTGTGCATAATCAAAAAGGTGAAACCTCTTAtttt                                                                      <  1:3286124/91‑1 (MQ=255)
                      tATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtttt                                                                      <  1:2047140/91‑1 (MQ=255)
                       gtgaaaacaaacaaactttacaccgtgaatcaaaataatcattaaaattaaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTg                                                                     >  1:3324851‑M1/68‑91 (MQ=255)
                       gtgaaaacaaacaaactttacaccgtgaagcaaaataatcattaaaattaaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTg                                                                     >  1:3326278‑M1/68‑91 (MQ=255)
                       gtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTg                                                                     >  1:532975‑M1/68‑91 (MQ=255)
                       gtgaaaacaaacaaactgtacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTg                                                                     >  1:455157‑M1/68‑91 (MQ=255)
                       aTGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTg                                                                     >  1:2803895/1‑91 (MQ=255)
                        tgaaaacaaacaaactttacaccgtgaaacaaaataatcattaagattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTga                                                                    >  1:3292485‑M1/67‑91 (MQ=255)
                        tGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTga                                                                    >  1:2097560/1‑91 (MQ=255)
                        tGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTga                                                                    >  1:3932472/1‑91 (MQ=255)
                         gCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTgag                                                                   >  1:2269215/1‑91 (MQ=255)
                         gCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTgag                                                                   >  1:2629932/1‑91 (MQ=255)
                         gCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTgag                                                                   >  1:4042762/1‑91 (MQ=255)
                          cGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTgaga                                                                  >  1:1347477/1‑91 (MQ=255)
                           gACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGAt                                                                 >  1:1534857/1‑91 (MQ=255)
                           gACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGAt                                                                 >  1:1045643/1‑91 (MQ=255)
                            aCAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGAtt                                                                >  1:591665/1‑91 (MQ=255)
                              aaTTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTc                                                              >  1:986009/1‑91 (MQ=255)
                                aacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCAc                                                            >  1:968849‑M1/59‑91 (MQ=255)
                                 acaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCAcc                                                           >  1:1821551‑M1/58‑91 (MQ=255)
                                  caaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCt                                                          >  1:3725841‑M1/57‑91 (MQ=255)
                                   tAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtt                                                         >  1:3054795/1‑91 (MQ=255)
                                   tAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtt                                                         <  1:2759632/91‑1 (MQ=255)
                                   tAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtt                                                         >  1:250176/1‑91 (MQ=255)
                                   aaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtt                                                         >  1:1433400‑M1/56‑91 (MQ=255)
                                      ctttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCttttt                                                      >  1:3158651‑M1/53‑91 (MQ=255)
                                       aTTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATATAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCttttta                                                     <  1:1979198/91‑2 (MQ=17)
                                        tttATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTa                                                    <  1:1229002/91‑1 (MQ=255)
                                           attattTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTg                                                 >  1:3302050/1‑91 (MQ=255)
                                            ttattTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAAttat                                                <  1:3421342/91‑3 (MQ=17)
                                            ttattTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGt                                                >  1:4088873/1‑91 (MQ=255)
                                             tattTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGtt                                               <  1:2800877/91‑1 (MQ=255)
                                              attTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTa                                              >  1:136409/1‑91 (MQ=255)
                                              attTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTa                                              >  1:1926989/1‑91 (MQ=255)
                                                  cAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaattt                                          >  1:11990/1‑91 (MQ=255)
                                                   aacaaaataatcattaaaattaaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaattta                                         >  1:1523695‑M1/40‑91 (MQ=255)
                                                      tGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaaat                                      <  1:1009335/91‑1 (MQ=255)
                                                       gAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaaatt                                     <  1:3718053/91‑1 (MQ=255)
                                                         aaaTCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCAACTTTTTTATTGTTaatttaaattta                                   >  1:3870928/1‑91 (MQ=255)
                                                          taatcattaaaattaaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAatttaaatttaa                                  >  1:3585253‑M1/33‑91 (MQ=255)
                                                          aaTCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAatttaaatttaa                                  <  1:2386687/91‑1 (MQ=255)
                                                            tCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAaatttaatt                                >  1:3037604/1‑91 (MQ=255)
                                                             cTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAaatttaattt                               >  1:4009962/1‑91 (MQ=255)
                                                              ttttATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTCTTATTGTTAATTTAaatttaattta                              >  1:3863636/1‑90 (MQ=255)
                                                                ttATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAAtttaattttaa                            <  1:4117546/91‑1 (MQ=255)
                                                                 tATCATTTCATACGTGTGCATAGTTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAAtttaatttcaat                           >  1:3342931/1‑91 (MQ=255)
                                                                 tATCATTTCATACGTGTGCATAATTAAAAAGGTGAAGCCTCTTATTTTGAGATTTCACCTTCTTTATTGTTAATTTAAAtttaattttaat                           >  1:2309288/1‑91 (MQ=255)
                                                                 tATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAAtttaattttaat                           >  1:2311280/1‑91 (MQ=255)
                                                                     aTTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGatt                       <  1:3102328/91‑1 (MQ=255)
                                                                        tCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGattatt                    <  1:3115532/91‑1 (MQ=255)
                                                                          aTACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATATCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTAtttt                  <  1:3303880/91‑1 (MQ=255)
                                                                           tACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTg                 <  1:10920/91‑1 (MQ=255)
                                                                             cGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGtt               >  1:887232/1‑91 (MQ=255)
                                                                             cGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGtt               >  1:2602674/1‑91 (MQ=255)
                                                                              gtgtGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGttt              >  1:491637/1‑91 (MQ=255)
                                                                               tgtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTc             >  1:1508894/1‑91 (MQ=255)
                                                                               tgtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTc             >  1:624092/1‑91 (MQ=255)
                                                                               tgtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTc             >  1:688072/1‑91 (MQ=255)
                                                                                gtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCa            <  1:4130831/91‑1 (MQ=255)
                                                                                   aacaataAAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACgg         <  1:3633232‑M1/84‑1 (MQ=255)
                                                                                       aTTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTa     <  1:95448/91‑1 (MQ=255)
                                                                                         tAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTaaa   >  1:1660646/1‑91 (MQ=255)
                                                                                          AAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTAAAg  >  1:2533181‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTAAAG  >  USA300TCH1516_ALE/1661910‑1662090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.