New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1910682 =NA (NA)7 (0.080) 5/140 NT 10.4% intergenic (+215/‑340) crcB_2/USA300TCH1516_01771 Putative fluoride ion transporter CrcB/hypothetical protein
?USA300TCH1516_ALE 2684309 = 69 (0.700)intergenic (+68/+102) mvaS/ogt Hydroxymethylglutaryl‑CoA synthase/Methylated‑DNA‑‑protein‑cysteine methyltransferase

Only 100 of 115 total aligned reads displayed.

CCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGG  >  USA300TCH1516_ALE/1910592‑1910761
                                                                                          |                                                                                 
ccGTTTAAATAATGTGAATGTCAATAAATTCTCTAAACTAGTCGAAAATAAAGGGAGTGCGACATAAATCCCTAAAAAAAAGCAGTAAGAt                                                                                   <  1:3684372/91‑1 (MQ=255)
     tAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAAttt                                                                              <  1:1101153/91‑1 (MQ=255)
     tAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAAttt                                                                              <  1:1101170/91‑1 (MQ=255)
         taatGTGAATGTCAATAAATTCTCCAAACTAGTCGAACATAAAGGGAGTGGCACATAAATCCCTATAAAAAAGCAGTAAGATAATCTTC‑aa                                                                         >  1:3860697/1‑91 (MQ=255)
         taatGTGAATGTCAATAAATTCTCCAAACTAGTCGAACATAAAGGGAGTGGCACATAAATCCCTAGAAAAAAGCAGTAAGATAATCTTC‑aa                                                                         >  1:3860607/1‑91 (MQ=255)
           atGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AAtt                                                                       <  1:3596333/91‑1 (MQ=255)
           atGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AAtt                                                                       >  1:854461/1‑91 (MQ=255)
           atGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCACTAAAAAAAAGCAGTAAGATACTTTTC‑AAtt                                                                       >  1:3787419/1‑91 (MQ=255)
            tgtgAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTa                                                                      >  1:938701/1‑91 (MQ=255)
            tgtgAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTa                                                                      >  1:31324/1‑91 (MQ=255)
            tgtgAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTa                                                                      >  1:760373/1‑91 (MQ=255)
            tgtgAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCAAAAAAAAAGCAGTAAGATAATTTTC‑AATTa                                                                      <  1:509942/91‑1 (MQ=255)
              tgAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGa                                                                    <  1:2406070/91‑1 (MQ=255)
               gAATGTCAATAAAGTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGaa                                                                   <  1:4152970/91‑1 (MQ=255)
                 aTGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGaaaa                                                                 >  1:1117831/1‑91 (MQ=255)
                  tGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAa‑t                                                               <  1:1115698/91‑1 (MQ=255)
                  tGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAa‑tt                                                              <  1:2353643/91‑2 (MQ=37)
                   gTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAa‑tta                                                             <  1:2061024/91‑3 (MQ=25)
                    tCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAa‑tat                                                             <  1:2609861/91‑1 (MQ=255)
                      aaTAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCt                                                           >  1:2007676/1‑91 (MQ=255)
                      aaTAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCt                                                           >  1:3061111/1‑91 (MQ=255)
                       aTAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCtt                                                          <  1:2426861/91‑1 (MQ=255)
                       aTAAATTCTCCAAACTAGGCGAAAATAAAGGGAGTGGGACATAAAACCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCtt                                                          <  1:2429223/91‑1 (MQ=255)
                         aaaTTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAc                                                        <  1:1885049/91‑1 (MQ=255)
                         aaaTTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAc                                                        <  1:3626779/91‑1 (MQ=255)
                          aaTTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAct                                                       <  1:935542/91‑1 (MQ=255)
                          aaTTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAct                                                       <  1:2836977/91‑1 (MQ=21)
                           aTTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActg                                                      >  1:4116867/1‑91 (MQ=255)
                            ttCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgc                                                     <  1:3122137/91‑1 (MQ=255)
                            ttCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgc                                                     <  1:2618368/91‑1 (MQ=21)
                             tctcCAAACTAGTTGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGAT‑ATTTTC‑TAATTGAAAATTATCTTActgct                                                    <  1:1795244/91‑1 (MQ=18)
                             tctcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgct                                                    <  1:1368555/91‑1 (MQ=255)
                             tctcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgct                                                    <  1:2117882/91‑1 (MQ=18)
                              ctcCAAACTAGTCGAAAATAAAGGGTGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgctg                                                   <  1:3855160/91‑1 (MQ=255)
                              ctcCAAACTAGTCGAAAATAAAGGGAGTGGTACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgctg                                                   <  1:147924/91‑1 (MQ=255)
                              ctcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgctg                                                   <  1:3077621/91‑1 (MQ=255)
                              ctcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgctg                                                   <  1:927186/91‑1 (MQ=255)
                               tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  <  1:3346270/91‑1 (MQ=255)
                               tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  <  1:3346233/91‑1 (MQ=255)
                               tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  <  1:205166/91‑1 (MQ=255)
                                ccAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGtt                                                 >  1:944004/1‑91 (MQ=255)
                                 cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtc                                                >  1:1200894/1‑91 (MQ=255)
                                  aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtctc                                              <  1:1952088/91‑1 (MQ=255)
                                   aaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtctc                                              <  1:652874/91‑1 (MQ=255)
                                   aaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtctc                                              <  1:650617/91‑1 (MQ=255)
                                     cTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTa                                            <  1:1361914/91‑1 (MQ=255)
                                        gTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAttt                                         >  1:3772794/1‑91 (MQ=255)
                                        gTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAttt                                         >  1:2800458/1‑91 (MQ=255)
                                        gTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAttt                                         >  1:2155310/1‑91 (MQ=255)
                                        gTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAttt                                         >  1:737492/1‑91 (MQ=255)
                                          cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtat                                       <  1:4130265/91‑1 (MQ=255)
                                          cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtat                                       <  1:490977/91‑1 (MQ=255)
                                                tAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATa                                 <  1:1038836/91‑1 (MQ=255)
                                                tAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATa                                 <  1:1334077/91‑1 (MQ=255)
                                                tAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATa                                 <  1:2490041/91‑1 (MQ=255)
                                                  aaGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACt                               >  1:68049/1‑91 (MQ=255)
                                                  aaGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACt                               >  1:749967/1‑91 (MQ=255)
                                                   aGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACtt                              <  1:532779/91‑1 (MQ=40)
                                                    gggAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATAcgaa                             <  1:3404624/91‑4 (MQ=255)
                                                    gggAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  1:3565320/1‑91 (MQ=40)
                                                    gggAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  1:3565347/1‑91 (MQ=40)
                                                    gggAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  1:4012418/1‑91 (MQ=40)
                                                     ggAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCg                            >  1:2498699/1‑91 (MQ=38)
                                                       aGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTa                          <  1:3303974/91‑1 (MQ=37)
                                                          gggACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                       <  1:1357935/91‑1 (MQ=33)
                                                           ggAGATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGa                      <  1:3730379/91‑1 (MQ=21)
                                                           ggACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGa                      >  1:1283900/1‑91 (MQ=34)
                                                           ggACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGa                      >  1:1283887/1‑91 (MQ=34)
                                                           ggACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGa                      >  1:1800224/1‑91 (MQ=34)
                                                              cATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                   >  1:2568356/1‑91 (MQ=34)
                                                              cATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                   >  1:2426004/1‑91 (MQ=34)
                                                              cATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                   <  1:3704086/91‑1 (MQ=34)
                                                                tAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                 <  1:4023153/91‑1 (MQ=34)
                                                                 aaaTCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCt                <  1:4125576/91‑1 (MQ=34)
                                                                 aaaTCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCt                <  1:4125443/91‑1 (MQ=34)
                                                                  aaTCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt               <  1:4010663/91‑1 (MQ=34)
                                                                    tCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAGA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGCATGGCTTCg             >  1:3971605/1‑91 (MQ=255)
                                                                    tCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             <  1:2390999/91‑1 (MQ=34)
                                                                    tCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             >  1:2403686/1‑91 (MQ=34)
                                                                    tCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             >  1:347218/1‑91 (MQ=34)
                                                                     cccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  1:204311/1‑91 (MQ=34)
                                                                     cccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  1:2628105/91‑1 (MQ=33)
                                                                     cccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  1:910593/1‑91 (MQ=34)
                                                                     cccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  1:2518752/1‑91 (MQ=34)
                                                                     cccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  1:156646/91‑1 (MQ=34)
                                                                     cccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  1:116906/1‑91 (MQ=34)
                                                                      ccTGAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTGATACAATACTTCGTATTGAATGGCTTCGCt           <  1:3213913/91‑1 (MQ=255)
                                                                      ccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt           <  1:2202690/91‑1 (MQ=34)
                                                                      ccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt           <  1:2203476/91‑1 (MQ=34)
                                                                      ccTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATATATACAATACTTCGTATTGAATGGCTTCGCt           <  1:3679653/91‑1 (MQ=21)
                                                                        tAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCttt         >  1:2587102/1‑91 (MQ=34)
                                                                         aaaaaaaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTc        <  1:3813857/91‑1 (MQ=34)
                                                                          aaaaaaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc       <  1:2886951/91‑1 (MQ=33)
                                                                          aaaaaaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc       >  1:4044178/1‑91 (MQ=34)
                                                                          aaaaaaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc       >  1:3920645/1‑91 (MQ=34)
                                                                          aaaaaaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc       <  1:3874755/91‑1 (MQ=34)
                                                                             aaaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAg    <  1:1058122/91‑1 (MQ=33)
                                                                              aaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAgg   >  1:2204257/1‑91 (MQ=32)
                                                                               aaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg  <  1:3619925/91‑1 (MQ=31)
                                                                               aaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg  <  1:1575062/91‑1 (MQ=31)
                                                                                          |                                                                                 
CCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGG  >  USA300TCH1516_ALE/1910592‑1910761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.