| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1910682 = | NA (NA) | 7 (0.080) | 5/140 | NT | 10.4% | intergenic (+215/‑340) | crcB_2/USA300TCH1516_01771 | Putative fluoride ion transporter CrcB/hypothetical protein |
| ? | USA300TCH1516_ALE | 2684309 = | 69 (0.700) | intergenic (+68/+102) | mvaS/ogt | Hydroxymethylglutaryl‑CoA synthase/Methylated‑DNA‑‑protein‑cysteine methyltransferase | |||||
Only 100 of 215 total aligned reads displayed.
GTGAATATCACAGACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGG > USA300TCH1516_ALE/2684219‑2684398 | tgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattat < 1:3882681‑M2/1‑1 (MQ=255)tgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattat < 1:1162134‑M2/1‑1 (MQ=255)gTGAATATCACAGACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGt < 1:413782/91‑1 (MQ=255) tGAATATCACAGACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTc < 1:4033870/91‑1 (MQ=255) gagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTc < 1:3255955‑M2/2‑1 (MQ=255) gagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTc > 1:3938499‑M2/90‑91 (MQ=255) gagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTc > 1:1290955‑M2/90‑91 (MQ=255) gagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTc > 1:2518363‑M2/90‑91 (MQ=255) agacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCt < 1:2663848‑M2/3‑1 (MQ=255) agacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCt > 1:2748710‑M2/89‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:660387‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:2799435‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:2782359‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:1109940‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:3892632‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:222818‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:3359932‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:3708126‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:191998‑M2/88‑91 (MQ=255) gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCtt > 1:201753‑M2/88‑91 (MQ=255) acggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTa < 1:2545302‑M2/5‑1 (MQ=255) acggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTa < 1:2358390‑M2/5‑1 (MQ=255) acggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTa < 1:3434717‑M2/5‑1 (MQ=255) acggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTa > 1:339538‑M2/87‑91 (MQ=255) acgacaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTa > 1:3867745‑M2/87‑91 (MQ=255) tatCACAGACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTAc > 1:2107303/1‑91 (MQ=255) cggcactctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAc < 1:2720826‑M2/6‑1 (MQ=255) cggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAc < 1:3965768‑M2/6‑1 (MQ=255) cggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAc < 1:896328‑M2/6‑1 (MQ=255) cggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAc > 1:698793‑M2/86‑91 (MQ=255) cggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAc > 1:125340‑M2/86‑91 (MQ=255) cggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAc < 1:4075297‑M2/6‑1 (MQ=255) cggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAc > 1:1644083‑M2/86‑91 (MQ=255) ggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTAct < 1:709639‑M2/7‑1 (MQ=255) atCACAGACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTAct > 1:2447834/1‑91 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActg > 1:300568‑M2/84‑91 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActg > 1:234638‑M2/84‑91 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActg < 1:2400561‑M2/8‑1 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActg < 1:2218179‑M2/8‑1 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActg > 1:218480‑M2/84‑91 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActg < 1:2615103‑M2/8‑1 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActg > 1:3552041‑M2/84‑91 (MQ=255) gcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaatcaTCTTActg > 1:3725173‑M2/84‑91 (MQ=255) caccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgc < 1:9049‑M2/9‑1 (MQ=255) caccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgc > 1:2994797‑M2/83‑91 (MQ=255) caccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgc < 1:3136564‑M2/9‑1 (MQ=255) caccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgc < 1:853565‑M2/9‑1 (MQ=255) caccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgc > 1:1552275‑M2/83‑91 (MQ=255) caccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgc < 1:1784739‑M2/9‑1 (MQ=255) accctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgct < 1:490699‑M2/10‑1 (MQ=255) accctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgct > 1:364060‑M2/82‑91 (MQ=255) accctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgct > 1:3407603‑M2/82‑91 (MQ=255) accctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgct < 1:2059765‑M2/10‑1 (MQ=255) accctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgct < 1:3078626‑M2/10‑1 (MQ=255) accctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgct > 1:2147292‑M2/82‑91 (MQ=255) accctacgaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgct > 1:3232028‑M2/82‑91 (MQ=255) ccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgctg > 1:1112687‑M2/81‑91 (MQ=255) ccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgctg > 1:1398663‑M2/81‑91 (MQ=255) ccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgctg > 1:1472269‑M2/81‑91 (MQ=255) ccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgctg < 1:1242857‑M2/11‑1 (MQ=255) ccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTActgctg > 1:3708279‑M2/81‑91 (MQ=255) cctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTACTGCTGt < 1:1090163‑M2/12‑1 (MQ=255) aGACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGt > 1:2630597/1‑91 (MQ=255) ctaggaaagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTACTGCTGtt < 1:2103884‑M2/13‑1 (MQ=255) aagcgaagccattcaatacgaagtattgtataaatagagaacagcagcaagatattttctaattgaaaataTCTTGCTGCTGTTCTCTAtt > 1:2370644‑M2/72‑91 (MQ=255) gccattcaatacgaagtattgtataaatagagaacagcagtaagatattttctaattcaaaattaTCTTACTGCTGTTCTCTAtttat‑‑aca > 1:3689868‑M2/66‑89 (MQ=255) tttAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCg > 1:887021/1‑91 (MQ=255) aaaaCACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTAt > 1:1417649/1‑91 (MQ=255) aaaaCACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTAt > 1:2896084/1‑91 (MQ=255) aaCACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtg < 1:145415/91‑1 (MQ=255) gaagtattgtataaatagagaacagcagtaagatattttctaattgaaaattaTCTTACTGCTGTTCTCTATTTATACAATACTTCGTAtt > 1:1114864‑M2/54‑91 (MQ=255) acacATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtga < 1:733099/91‑1 (MQ=255) cacaTATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtgaa > 1:3510277/1‑91 (MQ=255) caTATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtgaatg > 1:722778/1‑91 (MQ=255) caTATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtgaatg < 1:1329893/91‑1 (MQ=255) atatAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtgaatga > 1:2502569/1‑91 (MQ=255) tataATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtgaatgaa < 1:561780/91‑1 (MQ=255) tataATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtgaatgaa > 1:2925799/1‑91 (MQ=255) tataATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATtgaatgaa > 1:2926488/1‑91 (MQ=255) aataaAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTc > 1:662977/1‑91 (MQ=255) aataaAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTc < 1:2059107/91‑1 (MQ=255) tataaatagagaacagcagtaagatattttctaattgaaaattaTCTTACTGCTGTTCTCTATTTATACAATACTTCgtattgaatggctt > 1:446187‑M2/45‑87 (MQ=255) aaCCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTAt < 1:1460728/91‑1 (MQ=255) aaCCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTAt > 1:2947576/1‑91 (MQ=255) cTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGcc < 1:2603881/91‑1 (MQ=255) aaaaGCAGCAGTCAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTa > 1:3196973/1‑91 (MQ=255) aaaGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTAt > 1:871101/1‑91 (MQ=255) gcagTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGaca > 1:1870704/1‑91 (MQ=255) gcagTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGaca > 1:2598369/1‑91 (MQ=255) cagTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGacac < 1:823348/91‑1 (MQ=255) agTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGAcaca > 1:581142/1‑91 (MQ=255) gACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACattatt < 1:1708806/91‑1 (MQ=255) tAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTc < 1:3055541/91‑1 (MQ=255) tAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTc > 1:799015/1‑91 (MQ=255) aTTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCt > 1:1045147/1‑91 (MQ=255) ttGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTa < 1:3797053/91‑1 (MQ=255) ttGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTa > 1:22397/1‑91 (MQ=255) tGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTaa < 1:1845845/91‑1 (MQ=255) tCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCt < 1:198690/91‑1 (MQ=255) gTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTgg < 1:1016592/91‑1 (MQ=255) | GTGAATATCACAGACCAGAGTAGTCGGTGTATTTAAAACACATATAATAAAACCTAAAAGCAGCAGTAAGACCACTTCTAATTGAAATCGTCTTACTGCTGTTCTCTATTTAT‑‑AACACTTCGTATTGAATGAATTCATTATGCCTATTTGACACATTATTGAAGTTTTCCTAATGCCTGG > USA300TCH1516_ALE/2684219‑2684398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |