| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2082527 | 103 (1.050) | 13 (0.150) | 8/142 | NT | 12.1% | intergenic (+168/+156) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein |
| ? | USA300TCH1516_ALE | = 2082556 | 98 (1.120) | intergenic (+197/+127) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein | |||||
Only 100 of 193 total aligned reads displayed.
ATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGC > USA300TCH1516_ALE/2082439‑2082617 | aTCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAg < 1:2546189/91‑1 (MQ=255) tCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGa > 1:2512930/1‑91 (MQ=255) cATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGAt > 1:233620/1‑91 (MQ=255) cATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGAt > 1:118330/1‑91 (MQ=255) cATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGAt > 1:118901/1‑91 (MQ=255) cATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGAt > 1:2943931/1‑91 (MQ=255) atatatTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAg > 1:2244805/1‑91 (MQ=255) atatTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTa < 1:1927414/91‑1 (MQ=255) tatTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTaa < 1:2417555/91‑1 (MQ=255) atTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTaaa < 1:3189880/91‑1 (MQ=255) ttttATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTcaaa > 1:3263995/1‑91 (MQ=255) ttttATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTaaaa < 1:1314753/91‑1 (MQ=255) tttATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTaaaaa < 1:3126880/91‑1 (MQ=255) tATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAAc < 1:1657302/91‑1 (MQ=255) tATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAAc < 1:1657273/91‑1 (MQ=255) tATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAAc < 1:2657522/91‑1 (MQ=255) aTTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACt > 1:552038/1‑91 (MQ=255) tCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACttt > 1:532928/1‑91 (MQ=255) aGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACttttt > 1:677105/1‑91 (MQ=255) gCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTc > 1:3595829/1‑91 (MQ=255) gCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTc > 1:4121324/1‑91 (MQ=255) gCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTc > 1:199417/1‑91 (MQ=255) cAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCt > 1:1956822/1‑91 (MQ=255) aaCTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTa < 1:4067744/91‑1 (MQ=255) cTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATc < 1:3896007/91‑1 (MQ=255) gTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgt > 1:774728‑M2/1‑89 (MQ=255) tCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtc < 1:2345016‑M2/91‑4 (MQ=255) cAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtcc < 1:783589‑M2/91‑5 (MQ=255) cAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtcc > 1:848241‑M2/1‑87 (MQ=255) gaatgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCg > 1:380937‑M1/49‑91 (MQ=255) aaaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccg < 1:1526409‑M2/91‑6 (MQ=255) aaaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccg < 1:1526408‑M2/91‑6 (MQ=255) aaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACtgatagaaaaagttttttacttttcatctgtccga < 1:627878‑M1/91‑36 (MQ=255) atgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGAt > 1:3077651‑M1/47‑91 (MQ=255) acacTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACtgatagaaaaagttttttacttttcatctgtccgat < 1:1832018‑M1/91‑37 (MQ=255) acTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattt > 1:3922835‑M2/1‑82 (MQ=255) cTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATtta < 1:973774/91‑1 (MQ=255) cTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATtta < 1:332610/91‑1 (MQ=255) taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACtgatagaaaaagttttttacttttcatctgtccgattttttg < 1:2824401‑M1/91‑43 (MQ=255) taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACtgatagaaaaagttttttacttttcatctgtccgattttttg < 1:2824438‑M1/91‑43 (MQ=255) taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatta < 1:781240/91‑1 (MQ=255) taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatta < 1:846543/91‑1 (MQ=255) ccTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACagataaaaagttttttacttttcatctgtccgattttttgattt < 1:228406‑M1/91‑45 (MQ=255) aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa < 1:3152346/91‑1 (MQ=255) aTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAAc < 1:902639/91‑1 (MQ=255) ttttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAtt < 1:2799178/91‑1 (MQ=255) tttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAttt > 1:1704327/1‑91 (MQ=255) tttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAttt > 1:1079073/1‑91 (MQ=255) tttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAttt > 1:3643294/1‑91 (MQ=255) ttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTta > 1:1968836/1‑91 (MQ=255) ttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTta > 1:2979638/1‑91 (MQ=255) ttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTta < 1:1140686/91‑1 (MQ=255) tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat > 1:334032/1‑91 (MQ=255) aTCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAAc > 1:4090693/1‑91 (MQ=255) tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt > 1:2632054/1‑91 (MQ=255) tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt > 1:1248102/1‑91 (MQ=255) tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt > 1:3816146/1‑91 (MQ=255) tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt < 1:732155/91‑1 (MQ=255) tctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACttt > 1:1011701/1‑91 (MQ=255) ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTgg < 1:1792841/91‑1 (MQ=255) cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc < 1:3739217/91‑1 (MQ=255) tAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCa < 1:1229240/91‑1 (MQ=255) aaCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaa < 1:1824393/91‑1 (MQ=255) aCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaaa < 1:2843675/91‑1 (MQ=255) aCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaaa < 1:2706233/91‑1 (MQ=255) cAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAAt < 1:564184/91‑1 (MQ=255) aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCAc > 1:2458543/1‑91 (MQ=255) aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTGTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATccc > 1:3630213/1‑89 (MQ=255) caatAAATCCGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTc > 1:3730422‑M1/5‑91 (MQ=255) cAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGC‑AATCACTTCa < 1:1619782/91‑1 (MQ=255) aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa < 1:1619021/91‑1 (MQ=255) aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa > 1:1357492/1‑91 (MQ=255) aaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATCACTTTTGTCAAATCACTTCaaa > 1:136747/1‑91 (MQ=255) aaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaaa > 1:170877/1‑91 (MQ=255) AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc < 1:807149‑M1/91‑1 (MQ=255) aaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtg < 1:2633658‑M2/91‑55 (MQ=255) AATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACa > 1:340961‑M1/1‑91 (MQ=255) aTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgt < 1:1832018‑M2/91‑56 (MQ=255) aTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaagtatagtgt < 1:3973657‑M2/91‑56 (MQ=255) tCGGACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtt > 1:3165817‑M1/1‑6 (MQ=255) tCGGACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtt > 1:3016043‑M1/1‑6 (MQ=255) tCGGACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtt > 1:2298300‑M1/1‑6 (MQ=255) cGGACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgttt < 1:1526408‑M1/91‑87 (MQ=255) cGGACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgttt > 1:3040846‑M1/1‑5 (MQ=255) cGGACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgttt > 1:2229774‑M1/1‑5 (MQ=255) ggACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttg < 1:1561017‑M2/91‑59 (MQ=255) gACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga < 1:2524431‑M1/91‑89 (MQ=255) gACtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga < 1:2524805‑M1/91‑89 (MQ=255) gACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga < 1:1714088‑M2/91‑60 (MQ=255) gACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga < 1:2632747‑M2/91‑60 (MQ=255) gACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga < 1:3366970‑M2/91‑60 (MQ=255) GACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCaa > 1:1753313‑M1/1‑91 (MQ=255) aCtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgac > 1:1963768‑M1/1‑2 (MQ=255) aCtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgac < 1:1275053‑M1/91‑90 (MQ=255) aCtgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgac > 1:957263‑M1/1‑2 (MQ=255) aCAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgac < 1:1199495‑M2/91‑61 (MQ=255) aCAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgac < 1:2578274‑M2/91‑61 (MQ=255) ACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAg < 1:728971‑M1/91‑1 (MQ=255) ctgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgaca > 1:1067154‑M1/1‑1 (MQ=255) ctgatagaaaaagttttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgaca > 1:1066208‑M1/1‑1 (MQ=255) | ATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGC > USA300TCH1516_ALE/2082439‑2082617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |