BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2082527	103 (1.050)	13 (0.150)	8/142	NT	12.1%	intergenic (+168/+156)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	= 2082556	98 (1.120)	13 (0.150)	8/142	NT	12.1%	intergenic (+197/+127)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 160 total aligned reads displayed.

TGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAC  >  USA300TCH1516_ALE/2082467‑2082645

tGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAg                                                                                          >  1:1067154‑M2/1‑90 (MQ=255)

 gTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgt                                                                                         <  1:1275053‑M2/91‑3 (MQ=255)

  tCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtc                                                                                        <  1:2345016‑M2/91‑4 (MQ=255)

  tCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtc                                                                                        <  1:2524431‑M2/91‑4 (MQ=255)

   cAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtcc                                                                                       >  1:848241‑M2/1‑87 (MQ=255)

    gaatgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCg                                                                                      >  1:380937‑M1/49‑91 (MQ=255)

    aaaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccg                                                                                      <  1:1526409‑M2/91‑6 (MQ=255)

    aaaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccg                                                                                      >  1:2229774‑M2/1‑86 (MQ=255)

     aaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccga                                                                                     >  1:3165817‑M2/1‑85 (MQ=255)

     aaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccga                                                                                     >  1:3016043‑M2/1‑85 (MQ=255)

      atgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGAt                                                                                    >  1:3077651‑M1/47‑91 (MQ=255)

         cTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATtta                                                                                 <  1:973774/91‑1 (MQ=255)

            taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatta                                                                              <  1:781240/91‑1 (MQ=255)

            taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatta                                                                              <  1:846543/91‑1 (MQ=255)

                 aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                                                         <  1:3152346/91‑1 (MQ=255)

                      gTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAt                                                                    >  1:775296/1‑91 (MQ=255)

                        tttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAttt                                                                  >  1:1079073/1‑91 (MQ=255)

                         ttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTta                                                                 >  1:1968836/1‑91 (MQ=255)

                         ttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTta                                                                 >  1:2979638/1‑91 (MQ=255)

                         ttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTta                                                                 <  1:1751245/91‑1 (MQ=255)

                          tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                                                                >  1:333999/1‑91 (MQ=255)

                           ataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtata                                                               >  1:2819063/1‑91 (MQ=255)

                               aTCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAAc                                                           >  1:4090530/1‑91 (MQ=255)

                                tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                          <  1:732081/91‑1 (MQ=255)

                                tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                          >  1:3816146/1‑91 (MQ=255)

                                tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                          <  1:732155/91‑1 (MQ=255)

                                tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                          >  1:2632054/1‑91 (MQ=255)

                                tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                          >  1:1247530/1‑91 (MQ=255)

                                tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                          >  1:1248102/1‑91 (MQ=255)

                                tctctcCTAACAAAATCAAAAAATCGGACAGATCAAAAGTAAAAAACTTTTTCTATCAGACCGATTTATTATAGAACCAATTTATATAACt                                                          >  1:3308250/1‑91 (MQ=255)

                                 ctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACtt                                                         <  1:1791198/91‑1 (MQ=255)

                                  tctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACttt                                                        >  1:1011701/1‑91 (MQ=255)

                                   ctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACtttt                                                       <  1:1470991/91‑1 (MQ=255)

                                     ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTgg                                                     <  1:1792841/91‑1 (MQ=255)

                                      cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                                                    <  1:3739217/91‑1 (MQ=255)

                                       tAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCa                                                   <  1:1229240/91‑1 (MQ=255)

                                        aaCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaa                                                  <  1:1825742/91‑1 (MQ=255)

                                         aCAGAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaaa                                                 <  1:3730883/91‑1 (MQ=255)

                                         aCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaaa                                                 <  1:2843675/91‑1 (MQ=255)

                                          cAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAAt                                                <  1:564184/91‑1 (MQ=255)

                                            aaaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTT‑‑ATCTgtccgattttttgattttgttaggagagatgtataaaactaattagg                                            <  1:228406‑M2/91‑48 (MQ=255)

                                             aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCAc                                             >  1:2458543/1‑91 (MQ=255)

                                             aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTGTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATccc                                             >  1:3630213/1‑89 (MQ=255)

                                               tCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACtt                                           >  1:2422150/1‑91 (MQ=255)

                                               tCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACtt                                           <  1:1694515/91‑1 (MQ=255)

                                                cAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggta                                          <  1:2824401‑M2/91‑50 (MQ=255)

                                                cAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGC‑AATCACTTCa                                         <  1:1619782/91‑1 (MQ=255)

                                                 aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                         <  1:1619117/91‑1 (MQ=255)

                                                 aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                         >  1:4153642/1‑91 (MQ=255)

                                                  aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa                                        >  1:1358071/1‑91 (MQ=255)

                                                  aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa                                        >  1:4095558/1‑91 (MQ=255)

                                                  aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa                                        >  1:950834/1‑91 (MQ=255)

                                                   aaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATCACTTTTGTCAAATCACTTCaaa                                       >  1:136747/1‑91 (MQ=255)

                                                   aaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaaa                                       >  1:170876/1‑91 (MQ=255)

                                                    AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc                                      <  1:807149‑M1/91‑1 (MQ=255)

                                                    AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc                                      <  1:1182328‑M1/91‑1 (MQ=255)

                                                     AATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACa                                     >  1:340961‑M1/1‑91 (MQ=255)

                                                      aTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgt                                    <  1:1832018‑M2/91‑56 (MQ=255)

                                                      aTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaagtatagtgt                                    <  1:3973657‑M2/91‑56 (MQ=255)

                                                      ATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAt                                    >  1:3715324‑M1/1‑91 (MQ=255)

                                                       tCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtt                                   <  1:627878‑M2/91‑57 (MQ=255)

                                                       TCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAtt                                   <  1:312165‑M1/91‑1 (MQ=255)

                                                        CGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTc                                  <  1:1986837‑M1/91‑1 (MQ=255)

                                                         ggACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttg                                 <  1:1561017‑M2/91‑59 (MQ=255)

                                                          gACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga                                <  1:2632747‑M2/91‑60 (MQ=255)

                                                          gACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga                                <  1:3366970‑M2/91‑60 (MQ=255)

                                                          gACAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttga                                <  1:1714088‑M2/91‑60 (MQ=255)

                                                          GACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCaa                                >  1:2669528‑M1/1‑91 (MQ=255)

                                                           aCAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgac                               <  1:2578274‑M2/91‑61 (MQ=255)

                                                           aCAGATGAAAAGTAAAAAACTTTTTCTATCAgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgac                               <  1:1199495‑M2/91‑61 (MQ=255)

                                                           ACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAg                               <  1:728949‑M1/91‑1 (MQ=255)

                                                             aGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCa                             >  1:943428/1‑91 (MQ=255)

                                                               aTGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATc                           >  1:3526763/1‑91 (MQ=255)

                                                               aTGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATc                           <  1:2181769/91‑1 (MQ=255)

                                                               aTGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACATCAAACATTCAAGCATc                           >  1:3486496/1‑91 (MQ=255)

                                                               aTGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACATCAAACATTCAAGCATc                           >  1:3486580/1‑91 (MQ=255)

                                                                tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATca                          >  1:3480932/1‑91 (MQ=255)

                                                                tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATca                          <  1:3608565/91‑1 (MQ=255)

                                                                  aaaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATcaca                        >  1:3703479/1‑91 (MQ=255)

                                                                   aaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAt                       >  1:3548423/1‑91 (MQ=255)

                                                                    aaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtc                      <  1:3202387/91‑1 (MQ=255)

                                                                        aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTa                  <  1:3170372/91‑1 (MQ=255)

                                                                        aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTa                  <  1:1575286/91‑1 (MQ=255)

                                                                          aaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACa                <  1:2333934/91‑1 (MQ=255)

                                                                          aaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACa                <  1:1876264/91‑1 (MQ=255)

                                                                          aaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACa                <  1:1633220/91‑1 (MQ=255)

                                                                            aaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACaaa              <  1:110907/91‑1 (MQ=255)

                                                                               tttttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGt           <  1:2049190/91‑1 (MQ=255)

                                                                               tttttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGt           <  1:1819180/91‑1 (MQ=255)

                                                                                 tttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaa         >  1:2751159/1‑91 (MQ=255)

                                                                                 tttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaa         >  1:2751972/1‑91 (MQ=255)

                                                                                   tCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaaaa       >  1:1214333/1‑91 (MQ=255)

                                                                                    cTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAg      >  1:3658724/1‑91 (MQ=255)

                                                                                    cTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAg      <  1:2584931/91‑1 (MQ=255)

                                                                                    cTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAg      >  1:1024730/1‑91 (MQ=255)

                                                                                       tCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCa   >  1:3909296/1‑91 (MQ=255)

                                                                                        cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc  >  1:66051/1‑91 (MQ=255)

                                                                                        cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc  >  1:1915640/1‑91 (MQ=255)

                                                                                        cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc  >  1:1353988/1‑91 (MQ=255)

                                                                                        cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc  <  1:1179480/91‑1 (MQ=255)

TGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAC  >  USA300TCH1516_ALE/2082467‑2082645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.