BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2248208 =	88 (0.890)	4 (0.040)	4/150	NT	5.0%	intergenic (+2/+128)	coaW/USA300HOU_RS11505	Type II pantothenate kinase/hypothetical protein
*	?	USA300TCH1516_ALE	2248263 =	68 (0.740)	4 (0.040)	4/150	NT	5.0%	intergenic (+57/+73)	coaW/USA300HOU_RS11505	Type II pantothenate kinase/hypothetical protein

Only 100 of 110 total aligned reads displayed.

ATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTT  >  USA300TCH1516_ALE/2248118‑2248297

atgaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaata                                                                                           >  1:1037696‑M1/91‑91 (MQ=255)

 ttATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTtagaaaaatagaaa                                                                                          <  1:1896092/91‑1 (MQ=255)

  gaacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaataaa                                                                                         >  1:3101476‑M1/89‑91 (MQ=255)

   ataCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTtagaaaaatagaaaaa                                                                                        >  1:2592575/1‑91 (MQ=255)

   aacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaataaaa                                                                                        >  1:2358743‑M1/88‑91 (MQ=255)

   aacttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaataaaa                                                                                        >  1:3899208‑M1/88‑91 (MQ=255)

    taCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAg                                                                                       <  1:1888007/91‑1 (MQ=255)

    taCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAg                                                                                       <  1:1628305/91‑1 (MQ=255)

    acttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAg                                                                                       >  1:772891‑M1/87‑91 (MQ=255)

     aCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGa                                                                                      <  1:1712565/91‑1 (MQ=255)

      cTGTGTTACTCGGTTGCAAACAGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGAc                                                                                     <  1:3963975/91‑1 (MQ=255)

      cTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGAc                                                                                     <  1:283810/91‑1 (MQ=255)

      cTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGAc                                                                                     >  1:1909723/1‑91 (MQ=255)

        gtgtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCa                                                                                   >  1:1471142/1‑91 (MQ=255)

         tgtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCAt                                                                                  <  1:1808397/91‑1 (MQ=255)

          gtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCAtt                                                                                 <  1:1534190/91‑1 (MQ=255)

          gtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCAtt                                                                                 >  1:546815/1‑91 (MQ=255)

            tACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTta                                                                               <  1:2169486/91‑1 (MQ=255)

            tACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTta                                                                               <  1:1215918/91‑1 (MQ=255)

                cgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATg                                                                           >  1:921240/1‑91 (MQ=255)

                cgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATg                                                                           >  1:320820/1‑91 (MQ=255)

                 ggTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgc                                                                          <  1:3362788/91‑1 (MQ=255)

                 ggTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgc                                                                          >  1:1483585/1‑91 (MQ=255)

                 ggTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgc                                                                          <  1:3652057/91‑1 (MQ=255)

                  gTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcg                                                                         <  1:2385033/91‑1 (MQ=255)

                  gTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcg                                                                         >  1:518657/1‑91 (MQ=255)

                  gTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcg                                                                         <  1:3514549/91‑1 (MQ=255)

                   ttGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcgc                                                                        >  1:2363775/1‑91 (MQ=255)

                   ttGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcgc                                                                        <  1:3822324/91‑1 (MQ=255)

                   ttGCAAACCGTACTATGTTGAAAACAGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcgc                                                                        <  1:3873135/91‑1 (MQ=255)

                   ttGCAAACCGTACTATGTTGAAAACAGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATgcgc                                                                        <  1:3872991/91‑1 (MQ=255)

                    tGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGcgcg                                                                       >  1:500595/1‑91 (MQ=255)

                     gCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgt                                                                      <  1:2154068/91‑1 (MQ=255)

                     gCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgt                                                                      <  1:557299/91‑1 (MQ=255)

                        aaCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgttgt                                                                   >  1:1532882/1‑91 (MQ=255)

                        aaCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgttgt                                                                   <  1:614208/91‑1 (MQ=255)

                        aaCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgttgt                                                                   >  1:906024/1‑91 (MQ=255)

                        aaCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCgttgt                                                                   >  1:1246849/1‑91 (MQ=255)

                          ccGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGttt                                                                 <  1:2207438/91‑1 (MQ=255)

                          ccGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGttt                                                                 <  1:574121/91‑1 (MQ=255)

                          ccGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGttt                                                                 >  1:1402885/1‑91 (MQ=255)

                          ccGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGttt                                                                 >  1:2673025/1‑91 (MQ=255)

                              aCTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaa                                                             >  1:1176047/1‑91 (MQ=255)

                              aCTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaa                                                             >  1:1358443/1‑91 (MQ=255)

                               cTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaat                                                            >  1:138278/1‑91 (MQ=255)

                               cTATGGTGATAACGGCTCATTTTCAGGTGCTATTTGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCTTTGTTTtaaat                                                            <  1:2246949/91‑1 (MQ=255)

                                 aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaataa                                                          >  1:2526462/1‑91 (MQ=255)

                                 aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaataa                                                          >  1:3950235/1‑91 (MQ=255)

                                 aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaataa                                                          <  1:51682/91‑1 (MQ=255)

                                 aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaataa                                                          >  1:3001882/1‑91 (MQ=255)

                                 aTGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaataa                                                          <  1:4013000/91‑1 (MQ=255)

                                    ttGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACg                                                       >  1:422304/1‑91 (MQ=255)

                                     tGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGc                                                      <  1:2304190/91‑1 (MQ=255)

                                       aagtgataataaatggagcaatacgtattcaatacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCta                                                    >  1:3549493‑M1/52‑91 (MQ=255)

                                       aaaaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCta                                                    <  1:3007187/91‑1 (MQ=255)

                                         aaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtata                                                  >  1:418807/1‑91 (MQ=255)

                                         aaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtata                                                  >  1:3909611/1‑91 (MQ=255)

                                          tgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtatat                                                 >  1:2393618‑M1/49‑91 (MQ=255)

                                           cGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGATCATTTATATGCGCGTTGTTTTAAATAAACGCtatata                                                <  1:3481287/91‑1 (MQ=255)

                                           cGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGAACATTTATATGCGCGTTGTTTTAAATAAACGCtatata                                                <  1:3517464/91‑1 (MQ=255)

                                             gcgcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATaaa                                              <  1:2098948/91‑1 (MQ=255)

                                               gcATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATg                                            >  1:894582/1‑91 (MQ=255)

                                                cATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg                                           <  1:3633554/91‑1 (MQ=255)

                                                cATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg                                           <  1:3634725/91‑1 (MQ=255)

                                                 aTTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGc                                          <  1:2332563/91‑1 (MQ=255)

                                                  ttttCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGcc                                         <  1:2053236/91‑1 (MQ=255)

                                                  ttttCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGcc                                         <  1:596578/91‑1 (MQ=255)

                                                  ttttCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGcc                                         >  1:2233056/1‑91 (MQ=255)

                                                   tttCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCt                                        <  1:123824/91‑1 (MQ=255)

                                                     ggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttt                                      >  1:300288‑M1/38‑91 (MQ=255)

                                                      gaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtttt                                     >  1:2890277‑M1/37‑91 (MQ=255)

                                                        ggTGCTATTGGTGCATTATATTTAGAAAAATAGAAAACGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttat                                   >  1:3501434/1‑91 (MQ=255)

                                                        ggTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttat                                   >  1:787914/1‑91 (MQ=255)

                                                        ggTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttat                                   <  1:4117707/91‑1 (MQ=255)

                                                        ggTGCTATTGGGGCATTATATTTAGAAAAAGAGTAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttat                                   <  1:3394447/91‑1 (MQ=255)

                                                           gCTATTGGTACATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttatttt                                >  1:1898565/1‑91 (MQ=255)

                                                                 gnTGCATTANATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTc                          <  1:2340854/91‑1 (MQ=255)

                                                                 ggTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTc                          >  1:1670302/1‑91 (MQ=255)

                                                                 ggTGCATTATATTTAGAAAAATAGAAAAAGACCATTGATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTc                          <  1:3995351/91‑1 (MQ=255)

                                                                  gTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCt                         <  1:2603983/91‑1 (MQ=255)

                                                                      aTTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgt                     <  1:857807/91‑1 (MQ=255)

                                                                      aTTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgt                     <  1:857753/91‑1 (MQ=255)

                                                                       ttATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtg                    <  1:3333469/91‑1 (MQ=255)

                                                                       ttATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtg                    >  1:1392149/1‑91 (MQ=255)

                                                                        tataTTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt                   <  1:3471073/91‑1 (MQ=255)

                                                                        tataTTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt                   >  1:2709808/1‑91 (MQ=255)

                                                                           atTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt                >  1:2642414/1‑91 (MQ=255)

                                                                           atTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt                >  1:821129/1‑91 (MQ=255)

                                                                           atTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt                >  1:1620965/1‑91 (MQ=255)

                                                                           atTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt                <  1:2404278/91‑1 (MQ=255)

                                                                              tagaaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGaa             >  1:2497760/1‑91 (MQ=255)

                                                                                gaaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATa           >  1:4078395/1‑91 (MQ=255)

                                                                                  aaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACg         <  1:1528189/91‑1 (MQ=255)

                                                                                    aatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTa       >  1:3703897/1‑91 (MQ=255)

                                                                                     atagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAt      >  1:3120580/1‑91 (MQ=255)

                                                                                      tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAtt     <  1:1440439/91‑1 (MQ=255)

                                                                                       agaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTg    >  1:3914188/1‑91 (MQ=255)

                                                                                         aaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGCATACGTATTGtt  <  1:3195001/91‑1 (MQ=255)

                                                                                         aaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGtt  <  1:213059/91‑1 (MQ=255)

                                                                                         aaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGtt  <  1:2575975/91‑1 (MQ=255)

ATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAGAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTT  >  USA300TCH1516_ALE/2248118‑2248297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.