| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2388299 | 76 (0.770) | 11 (0.140) | 6/126 | NT | 13.5% | intergenic (+34/+68) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV |
| ? | USA300TCH1516_ALE | = 2388344 | 81 (1.050) | intergenic (+79/+23) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV | |||||
Only 100 of 134 total aligned reads displayed.
ATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTT > USA300TCH1516_ALE/2388209‑2388389 | aTGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATC < 1:1042783‑M1/91‑1 (MQ=255) tGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAtct < 1:3341474/91‑1 (MQ=255) tGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAtct < 1:3784394/91‑1 (MQ=255) tGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTAt < 1:2874306/91‑1 (MQ=255) tttACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtc < 1:3715670/91‑1 (MQ=255) tACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtcat < 1:1446718/91‑1 (MQ=255) aCTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtcatc > 1:2002104/1‑91 (MQ=255) cttcttAATTCATGGACGTCATGTATCTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtcatca < 1:3869695/91‑1 (MQ=255) ttcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTcatcat < 1:50848/91‑1 (MQ=255) ttcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTcatcat < 1:1429714/91‑1 (MQ=255) tcttAATTCATGGACGTCATGTAACTAGATATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCAtt < 1:3320789/91‑1 (MQ=255) tcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCAtt > 1:2608735/1‑91 (MQ=255) cttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCAttt > 1:2889298/1‑91 (MQ=255) ttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtg < 1:109290/91‑1 (MQ=255) tAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgt > 1:3931482/1‑91 (MQ=255) aTTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtct < 1:3063723/91‑1 (MQ=255) cATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgtc > 1:2477744/1‑91 (MQ=255) cATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgtc > 1:1727175/1‑91 (MQ=255) cATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgtc > 1:1262726/1‑91 (MQ=255) aTGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTcc < 1:3100534/91‑1 (MQ=255) tGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTccc < 1:455612/91‑1 (MQ=255) ggACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTcccc > 1:722987/1‑91 (MQ=255) aCGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCaa < 1:1024925/91‑1 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAg > 1:3948327/1‑91 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAg > 1:1818609/1‑91 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAg > 1:4052243/1‑91 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAg > 1:1405047/1‑91 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc > 1:2312168/1‑91 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGc > 1:3698177/1‑91 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGc > 1:2808779/1‑91 (MQ=255) gTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCaa > 1:3265356/1‑91 (MQ=255) gTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCaa > 1:3040740/1‑91 (MQ=255) gTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCaa > 1:2630997/1‑91 (MQ=255) tAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAAt < 1:3935736/91‑1 (MQ=255) aaCTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATTCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAAtt < 1:386394/91‑1 (MQ=255) tAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatg > 1:618782/1‑91 (MQ=255) gAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatgat > 1:590266/1‑91 (MQ=255) aaTGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGt < 1:2532393/91‑1 (MQ=255) tGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATATAc > 1:3213747/1‑91 (MQ=255) gCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt > 1:4009894/1‑91 (MQ=255) ccATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagag < 1:4085268‑M1/91‑47 (MQ=255) cATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTga < 1:3328190‑M2/91‑3 (MQ=255) tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatt < 1:2982283‑M2/91‑5 (MQ=255) tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatt < 1:2977488‑M2/91‑5 (MQ=255) gAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattg < 1:3614322‑M2/91‑6 (MQ=255) aCTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggc > 1:1542747‑M2/1‑84 (MQ=255) cTATATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggca < 1:3341329‑M1/91‑54 (MQ=255) cTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggca < 1:948688‑M1/91‑54 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcat < 1:1776280‑M1/91‑55 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcat < 1:216446‑M1/91‑55 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcat < 1:1776279‑M1/91‑55 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcat < 1:1776083‑M1/91‑55 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcat > 1:3577928‑M2/1‑82 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcat > 1:3578206‑M2/1‑82 (MQ=255) aaaTATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatg < 1:2435912‑M1/91‑56 (MQ=255) aaaTATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatg < 1:3459999‑M2/91‑11 (MQ=255) atatTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgct > 1:1496378‑M2/1‑79 (MQ=255) tatTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctt < 1:3018685‑M2/91‑14 (MQ=255) ttATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttt > 1:3632353‑M2/1‑75 (MQ=255) tataTTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttta > 1:4026043‑M2/1‑74 (MQ=255) atatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTaa > 1:3663052/1‑91 (MQ=255) tatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAg < 1:3183028/91‑1 (MQ=255) tatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAg < 1:1289387/91‑1 (MQ=255) atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGt < 1:3562215/91‑1 (MQ=255) atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGt > 1:2623936/1‑91 (MQ=255) aaaaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTa > 1:115902/1‑91 (MQ=255) aTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGtt < 1:3803212/91‑1 (MQ=255) tAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatata > 1:4026043‑M1/1‑17 (MQ=255) aaaaaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTg > 1:4028741/1‑91 (MQ=255) aaaGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaat < 1:2793996‑M1/91‑78 (MQ=255) aaaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTa > 1:3003510/1‑91 (MQ=255) aaGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaata < 1:3018685‑M1/91‑79 (MQ=255) aaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa > 1:2320322/1‑91 (MQ=255) aaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa > 1:2320429/1‑91 (MQ=255) aGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatat > 1:1496378‑M1/1‑12 (MQ=255) aGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc < 1:4052113/91‑1 (MQ=255) aGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc < 1:4052038/91‑1 (MQ=255) gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg > 1:2845158/1‑91 (MQ=255) gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg > 1:2779070/1‑91 (MQ=255) gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg > 1:248982/1‑91 (MQ=255) cATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatattt < 1:3459999‑M1/91‑82 (MQ=255) cATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattt < 1:2435912‑M2/91‑37 (MQ=255) aTGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatattta > 1:3577928‑M1/1‑9 (MQ=255) aTGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattta < 1:1776280‑M2/91‑38 (MQ=255) aTGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattta < 1:1776083‑M2/91‑38 (MQ=255) tGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttag < 1:948688‑M2/91‑39 (MQ=255) gCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatatttagt > 1:1542747‑M1/1‑7 (MQ=255) ccAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagtt < 1:1454541‑M2/91‑41 (MQ=255) ccAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTaa > 1:675866/1‑91 (MQ=255) cAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatatttagttc < 1:3614322‑M1/91‑87 (MQ=255) cAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAac > 1:419489/1‑91 (MQ=255) cAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAac > 1:210533/1‑91 (MQ=255) aaTCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatatttagttca < 1:2977488‑M1/91‑88 (MQ=255) aaTCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAaca < 1:2367380/91‑1 (MQ=255) tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt < 1:1149714/91‑1 (MQ=255) tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt < 1:1149629/91‑1 (MQ=255) tCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatatttagttcatg < 1:3328190‑M1/91‑90 (MQ=255) ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttcatgg < 1:4085268‑M2/91‑46 (MQ=255) ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttcatgg < 1:2713448‑M2/91‑46 (MQ=255) ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACtt < 1:1272943/91‑1 (MQ=255) | ATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTT > USA300TCH1516_ALE/2388209‑2388389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |