BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2388299	76 (0.770)	11 (0.140)	6/126	NT	13.5%	intergenic (+34/+68)	ribZ_1/sarV	Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV
*	?	USA300TCH1516_ALE	= 2388344	81 (1.050)	11 (0.140)	6/126	NT	13.5%	intergenic (+79/+23)	ribZ_1/sarV	Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV

Only 100 of 116 total aligned reads displayed.

GCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTAC  >  USA300TCH1516_ALE/2388254‑2388434

gCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt                                                                                            >  1:4009894/1‑91 (MQ=255)

    tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatt                                                                                        <  1:2982283‑M2/91‑5 (MQ=255)

    tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatt                                                                                        <  1:2977488‑M2/91‑5 (MQ=255)

     gAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattg                                                                                       <  1:3614322‑M2/91‑6 (MQ=255)

       aCTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggc                                                                                     >  1:1542747‑M2/1‑84 (MQ=255)

         tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcat                                                                                   >  1:3578206‑M2/1‑82 (MQ=255)

          aaaTATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatg                                                                                  <  1:3459999‑M2/91‑11 (MQ=255)

            atatTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgct                                                                                >  1:1496378‑M2/1‑79 (MQ=255)

             tatTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctt                                                                               <  1:3018685‑M2/91‑14 (MQ=255)

              atTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttt                                                                              <  1:2793996‑M2/91‑15 (MQ=255)

                ttATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttt                                                                            >  1:3632353‑M2/1‑75 (MQ=255)

                 tataTTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttta                                                                           >  1:4026043‑M2/1‑74 (MQ=255)

                  atatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTaa                                                                          >  1:3663052/1‑91 (MQ=255)

                   tatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAg                                                                         <  1:3183028/91‑1 (MQ=255)

                   tatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAg                                                                         <  1:1289387/91‑1 (MQ=255)

                    atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGt                                                                        >  1:2623936/1‑91 (MQ=255)

                    atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGt                                                                        <  1:3562215/91‑1 (MQ=255)

                    atTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGt                                                                        <  1:3561978/91‑1 (MQ=255)

                         aaaaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTa                                                                   >  1:115902/1‑91 (MQ=255)

                            aTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGtt                                                                <  1:3803212/91‑1 (MQ=255)

                            aTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGtt                                                                <  1:4017898/91‑1 (MQ=255)

                              aaaaaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTg                                                              >  1:1875743/1‑91 (MQ=255)

                                aaaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTa                                                            >  1:3003510/1‑91 (MQ=255)

                                 aaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa                                                           >  1:15313/1‑91 (MQ=255)

                                 aaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa                                                           >  1:2320429/1‑91 (MQ=255)

                                 aaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa                                                           >  1:2320322/1‑91 (MQ=255)

                                  aGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc                                                          <  1:4052113/91‑1 (MQ=255)

                                  aGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc                                                          <  1:4052038/91‑1 (MQ=255)

                                  aGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc                                                          <  1:4051916/91‑1 (MQ=255)

                                   gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg                                                         >  1:2845158/1‑91 (MQ=255)

                                   gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg                                                         >  1:248982/1‑91 (MQ=255)

                                   gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg                                                         >  1:2779070/1‑91 (MQ=255)

                                    cATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattt                                                        <  1:2435912‑M2/91‑37 (MQ=255)

                                     aTGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattta                                                       <  1:1776083‑M2/91‑38 (MQ=255)

                                     aTGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattta                                                       <  1:216446‑M2/91‑38 (MQ=255)

                                     aTGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattta                                                       <  1:1776280‑M2/91‑38 (MQ=255)

                                     aTGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatattta                                                       <  1:1776279‑M2/91‑38 (MQ=255)

                                      tGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttag                                                      <  1:948688‑M2/91‑39 (MQ=255)

                                      tGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatatag                                                      <  1:3341329‑M2/91‑39 (MQ=255)

                                      tGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCtt                                                      >  1:435875/1‑91 (MQ=255)

                                        ccAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagtt                                                    <  1:1454541‑M2/91‑41 (MQ=255)

                                        ccAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTaa                                                    >  1:675866/1‑91 (MQ=255)

                                         cAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAac                                                   >  1:210533/1‑91 (MQ=255)

                                         cAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAac                                                   >  1:419489/1‑91 (MQ=255)

                                          aaTCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAaca                                                  <  1:4073370/91‑1 (MQ=255)

                                          aaTCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAaca                                                  <  1:2367380/91‑1 (MQ=255)

                                            tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt                                                <  1:1149714/91‑1 (MQ=255)

                                            tctcTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACt                                                <  1:1149629/91‑1 (MQ=255)

                                             ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttcatgg                                               <  1:4085268‑M2/91‑46 (MQ=255)

                                             ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttcatgg                                               <  1:2713448‑M2/91‑46 (MQ=255)

                                             ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACtt                                               <  1:1272943/91‑1 (MQ=255)

                                               ctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTGACACTTCt                                             <  1:2904863/91‑1 (MQ=255)

                                               ctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCt                                             <  1:4113626/91‑1 (MQ=255)

                                               ctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCt                                             <  1:674752/91‑1 (MQ=255)

                                                  ttCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTAtt                                          >  1:677213/1‑91 (MQ=255)

                                                     atcatTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCt                                       >  1:1026176/1‑91 (MQ=255)

                                                     atcatTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCt                                       <  1:1697939/91‑1 (MQ=255)

                                                        atTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTa                                    >  1:2945618/1‑91 (MQ=255)

                                                         tttGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAg                                   <  1:2208691/91‑1 (MQ=255)

                                                         tttGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAg                                   <  1:4107800/91‑1 (MQ=255)

                                                            gtctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTaa                                >  1:3950279/1‑91 (MQ=255)

                                                              ctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAtt                              >  1:2663957/1‑91 (MQ=255)

                                                              ctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAtt                              >  1:3828122/1‑91 (MQ=255)

                                                              ctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTCAGTAAtt                              >  1:2069660/1‑91 (MQ=255)

                                                              ctgtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTAAGTAAtt                              >  1:2069618/1‑91 (MQ=255)

                                                                gtcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAAtttt                            >  1:2913492/1‑91 (MQ=255)

                                                                 tcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTa                           <  1:797458/91‑1 (MQ=255)

                                                                 tcCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTa                           >  1:3418881/1‑91 (MQ=255)

                                                                  ccccAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTAt                          <  1:3673168/91‑1 (MQ=255)

                                                                  ccccAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTAt                          >  1:3804273/1‑91 (MQ=255)

                                                                   cccAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATc                         <  1:3411677/91‑1 (MQ=255)

                                                                    ccAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCt                        <  1:807889/91‑1 (MQ=255)

                                                                     cAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTa                       >  1:2194246/1‑91 (MQ=255)

                                                                        gACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACa                    >  1:3189254/1‑91 (MQ=255)

                                                                        gACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACa                    <  1:896971/91‑1 (MQ=255)

                                                                          cGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttcatggcatttctagttacatgacgtccatgaatt                  <  1:611807‑M2/91‑75 (MQ=255)

                                                                          cGCAATTATGATGTACTGAGTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAt                  >  1:1481018/1‑91 (MQ=255)

                                                                            cAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAttt                >  1:992617/1‑91 (MQ=255)

                                                                            cAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAAttt                >  1:992616/1‑91 (MQ=255)

                                                                             aaTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTc               <  1:1847340/91‑1 (MQ=255)

                                                                              aTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCt              >  1:1789630/1‑91 (MQ=255)

                                                                              aTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCt              >  1:3266397/1‑91 (MQ=255)

                                                                              aTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCt              >  1:1715075/1‑91 (MQ=255)

                                                                              aTTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCt              >  1:1714876/1‑91 (MQ=255)

                                                                                tATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCttt            <  1:2658044/91‑1 (MQ=255)

                                                                                tATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCttt            <  1:168712/91‑1 (MQ=255)

                                                                                 atgatgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCtttt           >  1:424287/1‑91 (MQ=255)

                                                                                  tgatgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTg          >  1:822427/1‑91 (MQ=255)

                                                                                  tgatgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTg          >  1:126497/1‑91 (MQ=255)

                                                                                   gatgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTga         <  1:2267414/91‑1 (MQ=255)

                                                                                    atgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTgag        >  1:1325758/1‑91 (MQ=255)

                                                                                    atgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTgag        >  1:3150708/1‑91 (MQ=255)

                                                                                    atgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTgag        >  1:890513/1‑91 (MQ=255)

                                                                                    atgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTgag        <  1:429749/91‑1 (MQ=255)

                                                                                    atgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTgag        >  1:1709350/1‑91 (MQ=255)

                                                                                    atgTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTgag        >  1:4084576/1‑91 (MQ=255)

                                                                                       tACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAg     <  1:101223/91‑1 (MQ=255)

                                                                                        aCTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGt    <  1:1821675/91‑1 (MQ=255)

                                                                                         cTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTa   <  1:4030764/91‑1 (MQ=255)

                                                                                          tGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACGTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTAc  <  1:3292288/91‑1 (MQ=255)

GCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTAC  >  USA300TCH1516_ALE/2388254‑2388434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.