| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2561162 = | 86 (0.870) | 6 (0.070) | 4/146 | NT | 7.7% | coding (648/657 nt) | USA300HOU_RS13195 | hypothetical protein |
| ? | USA300TCH1516_ALE | 2561195 = | 66 (0.740) | intergenic (+24/+39) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
Only 100 of 106 total aligned reads displayed.
GAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGT > USA300TCH1516_ALE/2561072‑2561252 | gaagatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgtttta > 1:2461099‑M1/91‑91 (MQ=255)gaagatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgtttta < 1:560367‑M1/1‑1 (MQ=255)gaagatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgtttta < 1:566535‑M1/1‑1 (MQ=255) aaaTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAaca > 1:2706768/1‑91 (MQ=255) gatatttaccaggaaataaaggagacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttacac > 1:1298062‑M1/88‑91 (MQ=255) aTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAacaca > 1:3635207/1‑91 (MQ=255) aTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAacaca < 1:1687742/91‑1 (MQ=255) ggAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACg > 1:387645/1‑91 (MQ=255) ggAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACg > 1:424150/1‑91 (MQ=255) ggAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACg < 1:1760752/91‑1 (MQ=255) gAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgt > 1:1023288/1‑91 (MQ=255) aTACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgtaa > 1:2309231/1‑91 (MQ=255) tACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgtaag > 1:1945298/1‑91 (MQ=255) tACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgtaag < 1:1194629/91‑1 (MQ=255) cAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgtaagta > 1:3611284/1‑91 (MQ=255) cAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgtaagta > 1:2546901/1‑91 (MQ=255) tttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAaca > 1:4061521/1‑91 (MQ=255) ttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAacac < 1:2320739/91‑1 (MQ=255) ttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAacac < 1:1106017/91‑1 (MQ=255) ttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAacac < 1:1886613/91‑1 (MQ=255) ttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAacac < 1:1886420/91‑1 (MQ=255) ttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAacac < 1:1083735/91‑1 (MQ=255) ttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAacac < 1:2713244/91‑1 (MQ=255) aaTTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACAt < 1:4032314/91‑1 (MQ=255) ttCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTa < 1:1201285/91‑1 (MQ=255) tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTAc > 1:539896/1‑91 (MQ=255) tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTAc > 1:539895/1‑91 (MQ=255) tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTAc > 1:1401240/1‑91 (MQ=255) aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTc < 1:1052213/91‑1 (MQ=255) aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTc > 1:2852827/1‑91 (MQ=255) aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTc > 1:1207876/1‑91 (MQ=255) gacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTcgc > 1:3339824‑M1/65‑91 (MQ=255) acgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTcgcg > 1:3402881‑M1/64‑91 (MQ=255) acgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTcgcg > 1:3403875‑M1/64‑91 (MQ=255) acgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTcgcg > 1:3154367‑M1/64‑91 (MQ=255) aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcgcg > 1:3732294/1‑91 (MQ=255) aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcgcg < 1:2286304/91‑1 (MQ=255) cgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCgt > 1:1575631‑M1/63‑91 (MQ=255) gaagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgtg > 1:334280/1‑91 (MQ=255) gaagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgtg > 1:333503/1‑91 (MQ=255) aagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgtgt < 1:923976/91‑1 (MQ=255) agaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgtgtg > 1:3604724/1‑91 (MQ=255) agaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgtgtg > 1:296425/1‑91 (MQ=255) caaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCGTGTGTa > 1:3121819‑M1/58‑91 (MQ=255) aaaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTa > 1:1872681/1‑91 (MQ=255) aaaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTa > 1:2957718/1‑91 (MQ=255) aaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaa > 1:3708105/1‑91 (MQ=255) aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa > 1:3189532/1‑91 (MQ=255) aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa > 1:4080875/1‑91 (MQ=255) aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa > 1:2763827/1‑91 (MQ=255) aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa > 1:1390694/1‑91 (MQ=255) aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa > 1:746008/1‑91 (MQ=255) gCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACa > 1:4043928/1‑91 (MQ=255) cATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACAt < 1:3747817/91‑1 (MQ=255) aTGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAAt > 1:39559/1‑91 (MQ=255) aTGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAAt > 1:3467028/1‑91 (MQ=255) gtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgc < 1:1658994/91‑1 (MQ=255) tgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcg > 1:15603/1‑91 (MQ=255) gCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcgc < 1:2802566/91‑1 (MQ=255) aaCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCaa < 1:590137/91‑1 (MQ=255) aaCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCaa < 1:2286549/91‑1 (MQ=255) cacaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAAcc < 1:790889/91‑2 (MQ=255) caTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTgg > 1:1791503/1‑91 (MQ=255) caTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTgg < 1:1189765/91‑1 (MQ=255) aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTggg > 1:2690471/1‑91 (MQ=255) aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTggg > 1:1450453/1‑91 (MQ=255) aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTggg < 1:1667609/91‑1 (MQ=255) ttCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGt < 1:3174612/91‑1 (MQ=255) ttCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGCGTGTAAAACATAAAATGCGCAAACTGGGt > 1:3319566/1‑91 (MQ=255) tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTc < 1:3426230/91‑1 (MQ=255) cATATACAATTGAAACTCAGCAACAAAATAAACACACGTAAGTAAATACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa > 1:3301171/1‑91 (MQ=255) cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa > 1:4142188/1‑91 (MQ=255) cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa > 1:1915004/1‑91 (MQ=255) atatACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAATTTAAAATGCGCAAACTGGGTCAg < 1:3061551/91‑1 (MQ=255) tataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAgg > 1:2208100/1‑91 (MQ=255) tataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACCGGGTCAgg > 1:2241210/1‑91 (MQ=255) ataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGt > 1:1043968/1‑91 (MQ=255) taCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGtt > 1:870044/1‑91 (MQ=255) cgaTTGAAAATCAGCAACAAAATAAACACACGAAAGTAAACACAATACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTg < 1:1908195/89‑1 (MQ=255) tGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCa > 1:2244221/1‑91 (MQ=255) gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAt < 1:2501558/91‑1 (MQ=255) gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAt > 1:1291665/1‑91 (MQ=255) aaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtt < 1:1105330/91‑1 (MQ=255) aaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtt > 1:893258/1‑91 (MQ=255) aaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtttt > 1:2237213/1‑91 (MQ=255) tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaa > 1:3226958/1‑91 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt < 1:3732380/91‑1 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt < 1:2577554/91‑1 (MQ=255) caacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAttt > 1:2088617/1‑91 (MQ=255) acaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt > 1:2527224/1‑91 (MQ=255) aaaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtat < 1:1785904/91‑1 (MQ=255) aaaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtat > 1:1205484/1‑91 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt < 1:2276947/91‑1 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt < 1:1484404/91‑1 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt < 1:1481844/91‑1 (MQ=255) aaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatta > 1:3931610/1‑91 (MQ=255) aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg < 1:1477628/91‑1 (MQ=255) aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg > 1:1257358/1‑91 (MQ=255) ACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt < 1:2471590‑M1/91‑1 (MQ=255) ACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt < 1:2671337‑M1/91‑1 (MQ=255) | GAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGT > USA300TCH1516_ALE/2561072‑2561252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |