BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2561162 =	86 (0.870)	6 (0.070)	4/146	NT	7.7%	coding (648/657 nt)	USA300HOU_RS13195	hypothetical protein
*	?	USA300TCH1516_ALE	2561195 =	66 (0.740)	6 (0.070)	4/146	NT	7.7%	intergenic (+24/+39)	USA300HOU_RS13195/cpdA	hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA

Only 100 of 101 total aligned reads displayed.

AAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTC  >  USA300TCH1516_ALE/2561105‑2561284

caaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCGTGTGTa                                                                                           >  1:3121819‑M1/58‑91 (MQ=255)

aaaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTa                                                                                           >  1:2957718/1‑91 (MQ=255)

aaaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTa                                                                                           >  1:1872681/1‑91 (MQ=255)

 aaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaa                                                                                          >  1:3708105/1‑91 (MQ=255)

  aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa                                                                                         >  1:4080875/1‑91 (MQ=255)

  aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa                                                                                         >  1:3189532/1‑91 (MQ=255)

  aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa                                                                                         >  1:2763827/1‑91 (MQ=255)

  aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa                                                                                         >  1:746008/1‑91 (MQ=255)

  aGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa                                                                                         >  1:1390694/1‑91 (MQ=255)

     gCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACa                                                                                      >  1:4043928/1‑91 (MQ=255)

      cATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACAt                                                                                     <  1:3747817/91‑1 (MQ=255)

           aTGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAAt                                                                                >  1:39559/1‑91 (MQ=255)

           aTGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAAt                                                                                >  1:3467028/1‑91 (MQ=255)

             gtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgc                                                                              <  1:1658994/91‑1 (MQ=255)

              tgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcg                                                                             >  1:15603/1‑91 (MQ=255)

               gCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcgc                                                                            <  1:2802566/91‑1 (MQ=255)

                 aaCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCaa                                                                          <  1:2286549/91‑1 (MQ=255)

                 aaCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCaa                                                                          <  1:590137/91‑1 (MQ=255)

                    cacaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAAcc                                                                       <  1:790889/91‑2 (MQ=255)

                      caTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTgg                                                                     >  1:1791503/1‑91 (MQ=255)

                      caTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTgg                                                                     <  1:1189765/91‑1 (MQ=255)

                       aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTggg                                                                    >  1:1450453/1‑91 (MQ=255)

                       aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTggg                                                                    <  1:1667609/91‑1 (MQ=255)

                       aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTggg                                                                    >  1:2690471/1‑91 (MQ=255)

                        ttCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGt                                                                   <  1:3174612/91‑1 (MQ=255)

                        ttCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGCGTGTAAAACATAAAATGCGCAAACTGGGt                                                                   >  1:3319566/1‑91 (MQ=255)

                         tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTc                                                                  <  1:3426230/91‑1 (MQ=255)

                          cATATACAATTGAAACTCAGCAACAAAATAAACACACGTAAGTAAATACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa                                                                 >  1:3301171/1‑91 (MQ=255)

                          cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa                                                                 >  1:4142188/1‑91 (MQ=255)

                          cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa                                                                 >  1:1915004/1‑91 (MQ=255)

                           atatACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAATTTAAAATGCGCAAACTGGGTCAg                                                                <  1:3061551/91‑1 (MQ=255)

                            tataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAgg                                                               >  1:2208100/1‑91 (MQ=255)

                            tataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACCGGGTCAgg                                                               >  1:2241210/1‑91 (MQ=255)

                             ataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGt                                                              >  1:1043968/1‑91 (MQ=255)

                              taCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGtt                                                             >  1:870044/1‑91 (MQ=255)

                                cgaTTGAAAATCAGCAACAAAATAAACACACGAAAGTAAACACAATACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTg                                                           <  1:1908195/89‑1 (MQ=255)

                                   ttGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTgcgc                                                        <  1:402578/91‑1 (MQ=255)

                                    tGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCa                                                       >  1:2244221/1‑91 (MQ=255)

                                     gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAt                                                      >  1:1291665/1‑91 (MQ=255)

                                     gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAt                                                      <  1:2501558/91‑1 (MQ=255)

                                      aaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtt                                                     <  1:1105330/91‑1 (MQ=255)

                                      aaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtt                                                     >  1:893258/1‑91 (MQ=255)

                                        aaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtttt                                                   >  1:2237213/1‑91 (MQ=255)

                                          tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaa                                                 >  1:3226958/1‑91 (MQ=255)

                                             gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt                                              <  1:2577554/91‑1 (MQ=255)

                                             gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt                                              <  1:3732380/91‑1 (MQ=255)

                                              caacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAttt                                             >  1:2088617/1‑91 (MQ=255)

                                                acaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt                                           >  1:2527224/1‑91 (MQ=255)

                                                  aaaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtat                                         >  1:1205484/1‑91 (MQ=255)

                                                  aaaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtat                                         <  1:1785904/91‑1 (MQ=255)

                                                   aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt                                        <  1:1481844/91‑1 (MQ=255)

                                                   aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt                                        <  1:1484404/91‑1 (MQ=255)

                                                   aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt                                        <  1:2276947/91‑1 (MQ=255)

                                                    aaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatta                                       >  1:3931610/1‑91 (MQ=255)

                                                        tacacacgcgagtaatgtgtttacttacgtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg                                   >  1:3121819‑M2/35‑91 (MQ=255)

                                                        aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg                                   <  1:1477628/91‑1 (MQ=255)

                                                        aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg                                   >  1:2649894/1‑91 (MQ=255)

                                                        aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg                                   >  1:1257358/1‑91 (MQ=255)

                                                         ACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt                                  <  1:2671337‑M1/91‑1 (MQ=255)

                                                         ACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt                                  <  1:2471590‑M1/91‑1 (MQ=255)

                                                          CACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTa                                 <  1:1300252‑M1/91‑1 (MQ=255)

                                                          CACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTa                                 <  1:3072012‑M1/91‑1 (MQ=255)

                                                             acgcgagtaatgtgtttacttacgtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCg                              >  1:1575631‑M2/30‑91 (MQ=255)

                                                             ACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCg                              <  1:3749448‑M1/91‑1 (MQ=255)

                                                             ACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCg                              <  1:3749832‑M1/91‑1 (MQ=255)

                                                              cgcgagtaatgtgtttacttacgtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt                             >  1:3403875‑M2/29‑91 (MQ=255)

                                                              cgcgagtaatgtgtttacttacgtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt                             >  1:3402881‑M2/29‑91 (MQ=255)

                                                              cgcgagtaatgtgtttacttacgtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt                             >  1:3154367‑M2/29‑91 (MQ=255)

                                                              CGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt                             <  1:975143‑M1/91‑1 (MQ=255)

                                                              CGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt                             >  1:660384‑M1/1‑91 (MQ=255)

                                                               gcgagtaatgtgtttacttacgtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtc                            >  1:3339824‑M2/28‑91 (MQ=255)

                                                                taagtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtct                           <  1:855497/91‑1 (MQ=255)

                                                                  agtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCa                         <  1:2381785/91‑1 (MQ=255)

                                                                   gtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCat                        <  1:1047568/91‑1 (MQ=255)

                                                                   gtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCat                        <  1:878810/91‑1 (MQ=255)

                                                                    taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                       <  1:3056164/91‑1 (MQ=255)

                                                                    taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                       <  1:3055609/91‑1 (MQ=255)

                                                                    taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                       <  1:2332202/91‑1 (MQ=255)

                                                                    taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGGCAGGTTTGCGCCTTTTAAATTTCTATTATTTGTATCGTCTCatt                       >  1:1235107/1‑91 (MQ=255)

                                                                      aaCACATTACTCGCGTGTGTAAAACATAAAATGTGCAAACTGGGTCAGGTTTGCGCATTGTAAATTTCTATTATTTGTATCGTCTCattta                     <  1:3680052/91‑1 (MQ=255)

                                                                      aaCACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCattta                     >  1:1622204/1‑91 (MQ=255)

                                                                        cacaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttatt                   >  1:3256132/1‑91 (MQ=255)

                                                                        cacaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttatt                   >  1:435784/1‑91 (MQ=255)

                                                                        cacaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttatt                   >  1:434840/1‑91 (MQ=255)

                                                                         acaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttattt                  >  1:1307226/1‑91 (MQ=255)

                                                                          caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc                 <  1:14126/91‑1 (MQ=255)

                                                                          caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc                 <  1:13820/91‑1 (MQ=255)

                                                                          caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc                 >  1:2564336/1‑91 (MQ=255)

                                                                              aCTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTgg             <  1:2133694/91‑1 (MQ=255)

                                                                               cTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGt            <  1:2850782/91‑1 (MQ=255)

                                                                               cTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTATATTATTTGTATCGACTCATTTATTTCTTGGt            >  1:3546602/1‑91 (MQ=255)

                                                                                tCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTa           <  1:1602443/91‑1 (MQ=255)

                                                                                tCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTa           <  1:1601217/91‑1 (MQ=255)

                                                                                 cgcgTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTCCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTaa          >  1:3595524/1‑91 (MQ=255)

                                                                                  gcgTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTaaa         >  1:472453/1‑91 (MQ=255)

                                                                                    gtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAata       >  1:1467722‑M2/7‑91 (MQ=255)

                                                                                      gtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCCTTTATTTCCTGGTAAATAtc     >  1:1298062‑M2/5‑91 (MQ=255)

                                                                                         tAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc  >  1:2461099‑M2/2‑91 (MQ=255)

                                                                                         tAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc  <  1:560367‑M2/90‑1 (MQ=255)

                                                                                         tAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc  <  1:566535‑M2/90‑1 (MQ=255)

AAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTC  >  USA300TCH1516_ALE/2561105‑2561284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.