BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	52489 =	136 (1.380)	7 (0.070)	5/160	NT	7.3%	intergenic (+99/‑574)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	52811 =	41 (0.420)	7 (0.070)	5/160	NT	7.3%	intergenic (+421/‑252)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein

Only 100 of 157 total aligned reads displayed.

AAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAAT  >  USA300TCH1516_ALE/52402‑52579

 aaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATc                                                                                        <  1:3813003/91‑1 (MQ=255)

   tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                      <  1:814968/91‑1 (MQ=255)

     tttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGt                                                                                    >  1:1885441/1‑91 (MQ=255)

      ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                   >  1:666588/1‑91 (MQ=255)

       tataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGa                                                                                  >  1:1733794/1‑91 (MQ=255)

        ataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa                                                                                 >  1:3348637/1‑91 (MQ=255)

         taGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                <  1:2823684/91‑1 (MQ=255)

         taGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                <  1:2823370/91‑1 (MQ=255)

         taGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                <  1:2958145/91‑1 (MQ=255)

         taGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                >  1:3240496/1‑91 (MQ=255)

         taGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                <  1:1638539/91‑1 (MQ=255)

            atatAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaataa                                                                             <  1:2565846/91‑1 (MQ=255)

               taATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                          >  1:89938/1‑91 (MQ=255)

                  ttaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                       <  1:3784747/91‑1 (MQ=255)

                  ttaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                       <  1:2654693/91‑1 (MQ=255)

                  ttaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                       <  1:3244257/91‑1 (MQ=255)

                  ttaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                       <  1:1314432/91‑1 (MQ=255)

                   taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAgg                                                                      <  1:790554/91‑1 (MQ=255)

                    aaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGa                                                                     <  1:155699/91‑1 (MQ=255)

                    aaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGa                                                                     <  1:2184369/91‑1 (MQ=255)

                          aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                               <  1:4104954/91‑1 (MQ=255)

                          aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                               <  1:3965457/91‑1 (MQ=255)

                          aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                               >  1:2938677/1‑91 (MQ=255)

                          aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                               <  1:151244/91‑1 (MQ=255)

                           attaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                              >  1:3693052/1‑91 (MQ=255)

                           attaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                              <  1:3829429/91‑1 (MQ=255)

                           attaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                              >  1:3693098/1‑91 (MQ=255)

                            ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTg                                                             <  1:3790189/91‑1 (MQ=255)

                             taatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa                                                            >  1:2717775/1‑91 (MQ=255)

                              aatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                           >  1:1826017/1‑91 (MQ=255)

                              aatATTAAGCCAGGATAATGTAGTCGTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                           <  1:3878961/91‑1 (MQ=255)

                               atatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                          >  1:3155345/1‑91 (MQ=255)

                               atatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                          >  1:3154154/1‑91 (MQ=255)

                                tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGagat                                                         >  1:3423426/1‑88 (MQ=255)

                                tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAat                                                         <  1:1235643/91‑1 (MQ=255)

                                   tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                      <  1:1184385/91‑1 (MQ=255)

                                    aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                     <  1:3126725/91‑1 (MQ=255)

                                    aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                     >  1:2415298/1‑91 (MQ=255)

                                     aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                    >  1:433965/1‑91 (MQ=255)

                                      gCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                   <  1:1524953/91‑1 (MQ=255)

                                       ccAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                                  <  1:1138501/91‑1 (MQ=255)

                                       ccAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                                  <  1:1896842/91‑1 (MQ=255)

                                        cAGGATAATGTAGTCTTAATCGTTCTGGAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                 <  1:1982762/91‑1 (MQ=255)

                                        cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                 >  1:3810060/1‑91 (MQ=255)

                                        cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                 <  1:1124112/91‑1 (MQ=255)

                                          ggATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta                                               >  1:2318555/1‑91 (MQ=255)

                                          ggATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta                                               >  1:2744946/1‑91 (MQ=255)

                                           gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                              <  1:1678692/91‑1 (MQ=255)

                                           atttcaaacgattcctctgattatttcacgcgattttcgcgcgaAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                              >  1:4065322‑M1/45‑91 (MQ=255)

                                              aaTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGAGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                           >  1:4147811/1‑91 (MQ=255)

                                               aTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                          <  1:1697550/91‑1 (MQ=255)

                                                tGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                         >  1:351299/1‑91 (MQ=255)

                                                 gTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                        <  1:1779303/91‑1 (MQ=255)

                                                 agcgcttcctctgattatttcacgtgatggtcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                        >  1:1857200‑M1/39‑91 (MQ=255)

                                                 aacgattcctctgattatttcacgtgattttcgcgcgaAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                        >  1:1522995‑M1/39‑91 (MQ=255)

                                                 aacgattcctctgattatttcacgggattttcgcgcgaAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                        >  1:1616877‑M1/39‑91 (MQ=255)

                                                  tAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                       <  1:1304035/91‑1 (MQ=255)

                                                   aGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                      <  1:685724/91‑1 (MQ=255)

                                                    gTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                     <  1:2094767/91‑1 (MQ=255)

                                                      cTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                   <  1:3889223/91‑1 (MQ=255)

                                                      cTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                   <  1:132327/91‑1 (MQ=255)

                                                      cTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                   >  1:3440228/1‑91 (MQ=255)

                                                      cTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                   >  1:3441176/1‑91 (MQ=255)

                                                       ttAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                  >  1:3514244/1‑91 (MQ=255)

                                                           tCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                              <  1:3332768/91‑1 (MQ=255)

                                                            cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                             >  1:1058741/1‑91 (MQ=255)

                                                            cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                             <  1:3773910/91‑1 (MQ=255)

                                                            cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                             >  1:4082373/1‑91 (MQ=255)

                                                            cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                             >  1:1058457/1‑91 (MQ=255)

                                                            cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAGCACGt                             >  1:3110940/1‑91 (MQ=255)

                                                             gTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                            <  1:1771366/91‑1 (MQ=255)

                                                              ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                           >  1:3079175/1‑91 (MQ=255)

                                                              ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                           >  1:255869/1‑91 (MQ=255)

                                                               tCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                          <  1:969418/91‑1 (MQ=255)

                                                               tCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                          <  1:3252576/91‑1 (MQ=255)

                                                               tCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                          >  1:3000277/1‑91 (MQ=255)

                                                               tCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                          >  1:2999817/1‑91 (MQ=255)

                                                                cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                         >  1:3266352/1‑91 (MQ=255)

                                                                cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                         >  1:858515/1‑91 (MQ=255)

                                                                cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                         >  1:858497/1‑91 (MQ=255)

                                                                cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                         >  1:246448/1‑91 (MQ=255)

                                                                cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                         >  1:3157408/1‑91 (MQ=255)

                                                                 tGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCACCGTAGTAATCGCGCGAAAATCACGTGAaat                        >  1:1399855/1‑91 (MQ=255)

                                                                    aaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat                     >  1:3714169/1‑91 (MQ=255)

                                                                     aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                    >  1:4003534/1‑91 (MQ=255)

                                                                     aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                    <  1:4109778/91‑1 (MQ=255)

                                                                          aaaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg               <  1:1393889/91‑1 (MQ=255)

                                                                           aaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa              >  1:3195932/1‑91 (MQ=255)

                                                                            aaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa             >  1:2965694/1‑91 (MQ=255)

                                                                            aaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa             <  1:1957152/91‑1 (MQ=255)

                                                                             aaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt            <  1:1948657/91‑1 (MQ=255)

                                                                                gttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGt         >  1:200497/1‑91 (MQ=255)

                                                                                gttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGt         <  1:900409/91‑1 (MQ=255)

                                                                                 ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt        <  1:2521725/91‑1 (MQ=40)

                                                                                  tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt       >  1:839167/1‑91 (MQ=40)

                                                                                   gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg      <  1:2597322/91‑1 (MQ=39)

                                                                                     ggAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa    <  1:643934/91‑1 (MQ=37)

                                                                                     ggAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa    <  1:500962/91‑1 (MQ=37)

                                                                                      aAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa   >  1:1504354‑M1/2‑91 (MQ=255)

                                                                                       aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat  <  1:2765628/91‑1 (MQ=33)

AAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAAT  >  USA300TCH1516_ALE/52402‑52579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.