| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 52489 = | 136 (1.380) | 7 (0.070) | 5/160 | NT | 7.3% | intergenic (+99/‑574) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 52811 = | 41 (0.420) | intergenic (+421/‑252) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein | |||||
ATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAAT > USA300TCH1516_ALE/52721‑52899 | tttcaaacgattcctctgattatttcacgtgattttcgcgcgattactacgatgatttcaaacgattcctctgattatttcacgcgatttt > 1:1504354‑M2/91‑91 (MQ=255) caaacgattcctctgattatttcacgtgattttcgcgcgattactacgatgatttcaaacgattcctctgattatttcacgcgatttTcgc > 1:311858‑M2/88‑91 (MQ=255) cgattcctctgattatttcacgtgattttcgcgcgattactacgatgatttcaaacgattcctctgattatttcacgcgatttTCGCGCGa > 1:2816643‑M2/84‑91 (MQ=255) cgcgcgattactacgatgatttcaaacgattcctctgattatttcacgtgatttTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGt > 1:3630648‑M2/55‑91 (MQ=255) gcgcgattactacgatgatttcaaacgattcctctgattatttcacgtgatttTCGCGCGAAAATCCCGTGAAATAATCAGAGGAATCGtt > 1:1616877‑M2/54‑91 (MQ=255) gcgcgattactacgatgatttcaaacgattcctctgattatttcacgtgatttTCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt > 1:1522995‑M2/54‑91 (MQ=255) gcgcgattactacgatgatttcaaacgattcctctgattatttcacgcgatttTCGCGCGACCATCACGTGAAATAATCAGAGGAAgcgct > 1:1857200‑M2/54‑89 (MQ=255) gcgattactacgatgatttcaaacgattcctctgattatttcacgtgatttTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTg > 1:2589474‑M2/52‑91 (MQ=255) ttactacgatgatttcaaacgattcctctgattatttcacgtgatttTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAat > 1:4065322‑M2/48‑91 (MQ=255) tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAGTcg > 1:3347594/1‑91 (MQ=14) tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcg > 1:1488283/1‑91 (MQ=31) tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcg > 1:2574998/1‑91 (MQ=31) cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgc < 1:2253438/91‑1 (MQ=32) gTTTGAACTCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGCAACGATTGCAATCATCGAAGTAATCGCGCGCAACTcgcg > 1:1664397/1‑91 (MQ=11) gTTTGAAATCATCGTAGTAATCGCGCGAAAATGACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAACGCGCGAAAATcgcg < 1:3540383/91‑1 (MQ=16) gTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg > 1:3741173/1‑91 (MQ=33) gTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg > 1:210411/1‑91 (MQ=33) gTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg < 1:3902020/91‑1 (MQ=33) gTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg < 1:996516/91‑1 (MQ=33) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt < 1:2198242/91‑1 (MQ=34) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt > 1:1710231/1‑91 (MQ=33) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt > 1:2262425/1‑91 (MQ=34) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt > 1:2262471/1‑91 (MQ=34) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt > 1:2262520/1‑91 (MQ=34) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt > 1:1439617/1‑91 (MQ=34) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt > 1:1439372/1‑91 (MQ=34) tttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGt < 1:766655/91‑1 (MQ=34) gAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaa > 1:1299860/1‑91 (MQ=33) gAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaa < 1:3881409/91‑1 (MQ=34) aaaTCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGTATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaaa > 1:3301862/1‑91 (MQ=21) aaTCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAaat < 1:1555157/91‑1 (MQ=33) aaTCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAaat > 1:402086/1‑91 (MQ=34) atcatcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAaata > 1:2266299/1‑91 (MQ=33) atcatcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAaata > 1:2266272/1‑91 (MQ=34) catcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAaataat < 1:2652149/91‑1 (MQ=33) atcGTAGTAATCGCGCGAAAATCACGTGAAATAATTAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATc < 1:3513526/91‑1 (MQ=18) atcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATc > 1:3630791/1‑91 (MQ=34) atcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATc > 1:3977100/1‑91 (MQ=34) atcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATc > 1:3243667/1‑91 (MQ=34) atcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATc > 1:317713/1‑91 (MQ=34) tcGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCa > 1:3066730/1‑91 (MQ=34) gtagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCagg > 1:626411/1‑90 (MQ=18) gtagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCaga > 1:2375892/1‑91 (MQ=33) gtagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCaga > 1:671104/1‑91 (MQ=33) gtagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCaga > 1:1389449/1‑91 (MQ=33) tagtgATCGCGCGAAAGTCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCagag < 1:1187244/91‑1 (MQ=16) tagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCagag < 1:1886481/91‑1 (MQ=33) tagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCagag < 1:249166/91‑1 (MQ=33) tagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCagag > 1:4118596/1‑91 (MQ=34) tagtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCagag < 1:588146/91‑1 (MQ=33) gtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGa < 1:1629391/91‑1 (MQ=33) taATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGaa < 1:2202353/91‑1 (MQ=33) taATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGaa < 1:1812429/91‑1 (MQ=33) taATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGaa < 1:1635675/91‑1 (MQ=34) gaTCGCGCGAAAATCACGTGAAATAATCCGAAGATTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAAt < 1:3413609/90‑1 (MQ=11) | ATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAAT > USA300TCH1516_ALE/52721‑52899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |