BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 280894	103 (1.050)	11 (0.130) +TTAATTGGGAGTA	7/134	NT	11.2%	intergenic (‑146/+11)	USA300HOU_RS01225/USA300HOU_RS01230	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	855632 =	105 (1.070)	11 (0.130) +TTAATTGGGAGTA	7/134	NT	11.2%	intergenic (+163/‑597)	zipA_1/cggR	Cell division protein ZipA/Central glycolytic genes regulator

Only 100 of 127 total aligned reads displayed.

TGGGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGTTT  >  USA300TCH1516_ALE/280804‑280984

tggGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGtttt                                                                                            <  1:499839/91‑1 (MQ=255)

  ggACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTgg                                                                                          >  1:3879403/1‑91 (MQ=255)

   gacgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGt                                                                                         >  1:2180009/1‑91 (MQ=255)

    acgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGta                                                                                        <  1:1070014/91‑1 (MQ=255)

    acgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGta                                                                                        >  1:1873236/1‑91 (MQ=255)

    acgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGta                                                                                        <  1:1069961/91‑1 (MQ=255)

        ccAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGa                                                                                    >  1:3377594/1‑91 (MQ=255)

          aaataaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATg                                                                                  >  1:2037857/1‑91 (MQ=255)

          aaataaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATg                                                                                  >  1:4132041/1‑91 (MQ=255)

           aataaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGt                                                                                 >  1:1484661/1‑91 (MQ=255)

            ataaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTc                                                                                <  1:673371/91‑1 (MQ=255)

             taaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATCGATGTCa                                                                               >  1:2071724/1‑91 (MQ=255)

             taaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCa                                                                               >  1:3367506/1‑91 (MQ=255)

             taaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCa                                                                               >  1:1415878/1‑91 (MQ=255)

             taaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCa                                                                               >  1:16353/1‑91 (MQ=255)

              aaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCat                                                                              <  1:2230270/91‑1 (MQ=255)

                atTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCattt                                                                            >  1:3522948/1‑91 (MQ=255)

                 ttttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTATAGTCATAGCTGTTTTGGTATAGATGTCattta                                                                           >  1:3525277/1‑91 (MQ=255)

                 ttttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCattta                                                                           >  1:1539645/1‑91 (MQ=255)

                  tttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttat                                                                          <  1:1373303/91‑1 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACCAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttctt                                                                         >  1:3090717/1‑91 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                         >  1:3090718/1‑91 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                         >  1:2085724/1‑91 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                         <  1:2951870/91‑1 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                         <  1:1507768/91‑1 (MQ=255)

                    tGCTAAAATCTCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttattt                                                                        <  1:3730259/91‑1 (MQ=255)

                    tGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttattt                                                                        >  1:2895034/1‑91 (MQ=255)

                     gCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAtttt                                                                       <  1:1580830/91‑1 (MQ=255)

                      cGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAttttt                                                                      >  1:2878000/1‑91 (MQ=255)

                      cGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAttttt                                                                      >  1:257400/1‑91 (MQ=255)

                       gAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTa                                                                     >  1:2856435/1‑91 (MQ=255)

                         aaaTATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACg                                                                   <  1:2419044/91‑1 (MQ=255)

                          aaTATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGt                                                                  >  1:2993397/1‑91 (MQ=255)

                          aaTATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGt                                                                  >  1:2993452/1‑91 (MQ=255)

                            tatCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGttt                                                                >  1:3438182/1‑91 (MQ=255)

                               catcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGt                                                             >  1:1516831/1‑91 (MQ=255)

                               catcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGt                                                             <  1:1926215/91‑1 (MQ=255)

                               catcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGt                                                             <  1:2841719/91‑1 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                            >  1:1839383/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                            >  1:367862/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                            >  1:3150979/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATCTATTTTTACGTTTAGtt                                                            >  1:3994146/1‑91 (MQ=255)

                                 tctcTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTa                                                           >  1:809282/1‑91 (MQ=255)

                                 tctcTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTa                                                           <  1:726673/91‑1 (MQ=255)

                                   tctGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTGATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTaaa                                                         <  1:3286652/91‑1 (MQ=255)

                                   tctGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTaaa                                                         <  1:1983194/91‑1 (MQ=255)

                                    ctGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAAt                                                        <  1:2764559/91‑1 (MQ=255)

                                       tCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACt                                                     <  1:680690/91‑1 (MQ=255)

                                       tCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACt                                                     <  1:680705/91‑1 (MQ=255)

                                        ccTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACtt                                                    >  1:4132722/1‑91 (MQ=255)

                                           aCTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttat                                                 >  1:2260544‑M1/1‑48 (MQ=255)

                                              cccAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAAcc                                              >  1:3584516/1‑91 (MQ=255)

                                              cccAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAAcc                                              >  1:3147651/1‑91 (MQ=255)

                                               ccAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCa                                             <  1:2028492/91‑1 (MQ=255)

                                                cAATTAAAAAACAGCCCTGACAAAGTAAAGTCATAGCTGTTTTGGAATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCaa                                            >  1:1339095/1‑91 (MQ=255)

                                                cAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCaa                                            <  1:2744458/91‑1 (MQ=255)

                                                cAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCaa                                            <  1:2743894/91‑1 (MQ=255)

                                                  aTTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACt                                          <  1:4079908/91‑1 (MQ=255)

                                                   ttAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTg                                         <  1:3172525/91‑1 (MQ=255)

                                                   ttAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTg                                         <  1:812969/91‑1 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaa                                      >  1:3938625/1‑91 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaa                                      >  1:3661614/1‑91 (MQ=255)

                                                        aaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccac                                    >  1:826931‑M1/1‑35 (MQ=255)

                                                        aaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAg                                    >  1:1073121/1‑91 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                  >  1:1157847‑M1/1‑33 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                  >  1:384101‑M1/1‑33 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                  >  1:1157705‑M1/1‑33 (MQ=255)

                                                           cAGCCATGACAACGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccaccac                                 >  1:3181955‑M1/1‑32 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccaccaca                                >  1:1354285‑M1/1‑31 (MQ=255)

                                                             gCCATGACAAAGGAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccaccacaa                               >  1:3181079‑M1/1‑30 (MQ=255)

                                                              ccATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCgtg                              >  1:2237186/1‑91 (MQ=255)

                                                                aTGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTa                            >  1:3369577/1‑91 (MQ=255)

                                                                aTGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTa                            <  1:1812788/91‑1 (MQ=255)

                                                                  gACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTAcc                          <  1:2734843/91‑1 (MQ=255)

                                                                   aCAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTAccc                         <  1:3921585/91‑1 (MQ=255)

                                                                     aaagtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGTCCGTGTACCCgg                       <  1:3174962/91‑1 (MQ=255)

                                                                        gtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTACATACTTCCAACCAACTGCAAAGACCGTGTACCCGGCTa                    <  1:3783435/91‑1 (MQ=255)

                                                                        gtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTACAAACCAACTGCAAAGACCGTGTACCCGGCTa                    >  1:3539921/1‑91 (MQ=255)

                                                                          aaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATg                  >  1:56913/1‑91 (MQ=255)

                                                                          aaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATg                  >  1:56301/1‑91 (MQ=255)

                                                                          aaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATg                  <  1:1623640/91‑1 (MQ=255)

                                                                           aagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATgg                 >  1:2154067/1‑91 (MQ=255)

                                                                              tCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGttt              >  1:1170821/1‑91 (MQ=255)

                                                                                 tAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTa           <  1:2132629/91‑1 (MQ=255)

                                                                                 tAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTa           <  1:1322913/91‑1 (MQ=255)

                                                                                 tAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTa           <  1:1323086/91‑1 (MQ=255)

                                                                                  aGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTAt          <  1:2573545/91‑1 (MQ=255)

                                                                                  aGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTAt          <  1:2400807/91‑1 (MQ=255)

                                                                                  aGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTAt          <  1:2573421/91‑1 (MQ=255)

                                                                                  aGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTAt          <  1:2573317/91‑1 (MQ=255)

                                                                                  aGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTAt          <  1:2404741/91‑1 (MQ=255)

                                                                                   gCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATc         >  1:1436482/1‑91 (MQ=255)

                                                                                   gCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATc         >  1:1852976/1‑91 (MQ=255)

                                                                                   gCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATc         <  1:1079640/91‑1 (MQ=255)

                                                                                    cTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCa        <  1:3098793/91‑1 (MQ=255)

                                                                                     tGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCaa       >  1:4057406/1‑91 (MQ=255)

                                                                                       ttttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATg     >  1:3100891/1‑91 (MQ=255)

                                                                                         ttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGtt   >  1:586346/1‑91 (MQ=255)

                                                                                         ttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGtt   <  1:1351624/91‑1 (MQ=255)

                                                                                          tGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTATGTATCAATGttt  >  1:4152439/1‑91 (MQ=255)

TGGGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGTTT  >  USA300TCH1516_ALE/280804‑280984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.