| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 365040 | 64 (0.650) | 9 (0.110) | 6/136 | NT | 13.4% | intergenic (+50/+55) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
| ? | USA300TCH1516_ALE | = 365070 | 62 (0.740) | intergenic (+80/+25) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
Only 100 of 154 total aligned reads displayed.
CTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGA > USA300TCH1516_ALE/364950‑365130 | gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc > 1:1582430‑M1/80‑91 (MQ=255)gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc > 1:3439134‑M1/80‑91 (MQ=255)gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc > 1:3645897‑M1/80‑91 (MQ=255)cTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC > 1:2702494‑M1/1‑91 (MQ=255) ttCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAcc < 1:3518/91‑1 (MQ=255) tCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCa > 1:2371176/1‑91 (MQ=255) tCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCa < 1:2920800/91‑1 (MQ=255) cAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCaa > 1:3727089/1‑91 (MQ=255) tttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgc > 1:382109/1‑91 (MQ=255) tttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgc > 1:382096/1‑91 (MQ=255) ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg < 1:1923003/91‑1 (MQ=255) ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg > 1:1508841/1‑91 (MQ=255) tCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcgc > 1:2731333/1‑91 (MQ=255) aGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCaa < 1:403614/91‑1 (MQ=255) atcaatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCATCAg > 1:3212580/1‑91 (MQ=255) tcaatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgc > 1:2194371/1‑91 (MQ=255) caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgcg < 1:2182920/91‑1 (MQ=255) caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgcg > 1:3240881/1‑91 (MQ=255) gCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaac < 1:3578965‑M1/91‑28 (MQ=255) gCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc < 1:2687511/91‑1 (MQ=255) accatcaacgtacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc > 1:3725122‑M1/53‑91 (MQ=255) accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc > 1:2829709‑M1/53‑91 (MQ=255) accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc > 1:693215‑M1/53‑91 (MQ=255) accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc > 1:642513‑M1/53‑91 (MQ=255) ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt > 1:2706781‑M1/52‑91 (MQ=255) ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt > 1:3952057‑M1/52‑91 (MQ=255) ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt > 1:3951186‑M1/52‑91 (MQ=255) ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt > 1:131912‑M1/52‑91 (MQ=255) cTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaact < 1:969295‑M1/91‑29 (MQ=255) ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaactt < 1:1007346‑M1/91‑30 (MQ=255) ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt < 1:3099805/91‑1 (MQ=255) catcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt > 1:761815‑M1/51‑91 (MQ=255) catcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt > 1:106920‑M1/51‑91 (MQ=255) catcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt > 1:2158069‑M1/51‑91 (MQ=255) catcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt > 1:2159099‑M1/51‑91 (MQ=255) tAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttg < 1:249145‑M1/91‑31 (MQ=255) aGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg < 1:848782‑M2/91‑2 (MQ=255) gTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgt < 1:2326814‑M2/91‑3 (MQ=255) aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtga < 1:1493874‑M1/91‑35 (MQ=255) aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtga > 1:2710615‑M2/1‑87 (MQ=255) ttGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgac > 1:1483430‑M2/1‑86 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTCgtgacgg < 1:2075328‑M2/91‑8 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg > 1:3046926‑M2/1‑84 (MQ=255) aTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtt > 1:1675078‑M2/1‑80 (MQ=255) gAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtttt < 1:2345494/91‑1 (MQ=255) aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa > 1:262207/1‑91 (MQ=255) aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa > 1:262172/1‑91 (MQ=255) aaTCGAAGTACCGAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa > 1:3187246/1‑91 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc < 1:2597416/91‑1 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc > 1:1255471/1‑91 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc > 1:831723/1‑91 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc > 1:1255326/1‑91 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc < 1:2910145/91‑1 (MQ=255) aaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc > 1:2756256‑M1/34‑91 (MQ=255) aaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc > 1:2756309‑M1/34‑91 (MQ=255) gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt < 1:2851451/91‑1 (MQ=255) gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt < 1:844110/91‑1 (MQ=255) gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt < 1:675142/91‑1 (MQ=255) aaGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa > 1:713744/1‑91 (MQ=255) aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCCACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa > 1:1154914/1‑91 (MQ=255) tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa > 1:1179906/1‑91 (MQ=255) aCCTAAATTAAATTCATGGCAAACCTAAACCCCATCAGCAAGTTGGCGCAACAGCGCATGATAACTTAGTGACGGGGTTTTATCATAACaa > 1:3310308/1‑91 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc > 1:1617183/1‑91 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc > 1:2193831/1‑91 (MQ=255) ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt > 1:939096/1‑91 (MQ=255) aaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtttt > 1:704375/1‑91 (MQ=255) ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg > 1:2467954/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 1:2905108/91‑1 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg > 1:1426633/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTACTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 1:3505241/91‑1 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc > 1:2920194/1‑91 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc > 1:1743108/1‑91 (MQ=255) ggCAATGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc < 1:268999/91‑1 (MQ=255) ggCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc < 1:1507377/91‑1 (MQ=255) gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg < 1:1746147/91‑1 (MQ=255) tatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt > 1:456486‑M1/8‑91 (MQ=255) aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt > 1:1360327/1‑91 (MQ=255) gCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgat < 1:2692327‑M1/91‑77 (MQ=255) aaCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcat > 1:1675078‑M1/1‑11 (MQ=255) aCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatt < 1:1920136‑M1/91‑82 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat < 1:2256992‑M1/91‑1 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat > 1:519580‑M1/1‑91 (MQ=255) CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt > 1:1482714‑M1/1‑91 (MQ=255) CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt > 1:1480708‑M1/1‑91 (MQ=255) CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt > 1:2734226‑M1/1‑91 (MQ=255) CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt > 1:1426483‑M1/1‑91 (MQ=255) CCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt > 1:4018126‑M1/1‑91 (MQ=255) ccGTCACgaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttac < 1:2075328‑M1/91‑85 (MQ=255) ccGTCACgaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttac < 1:2075188‑M1/91‑85 (MQ=255) cGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttaca < 1:1454285‑M1/91‑86 (MQ=255) cGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttaca < 1:1454329‑M1/91‑86 (MQ=255) cGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttaca < 1:2728399‑M1/91‑86 (MQ=255) gTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaa > 1:606642‑M1/1‑5 (MQ=255) tCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaat > 1:357489‑M1/1‑4 (MQ=255) tCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaat < 1:1691058‑M2/91‑58 (MQ=255) CACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt < 1:2230421‑M1/91‑1 (MQ=255) ACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTg < 1:1444633‑M1/91‑1 (MQ=255) ACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTg < 1:1919091‑M1/91‑1 (MQ=255) ccAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatact < 1:351768‑M2/91‑61 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa > 1:2981840‑M1/1‑91 (MQ=255) | CTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGA > USA300TCH1516_ALE/364950‑365130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |