BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	412131 =	79 (0.800)	8 (0.090)	6/144	NT	11.0%	coding (1028/1161 nt)	metC	Cystathionine beta‑lyase MetC
*	?	USA300TCH1516_ALE	412165 =	59 (0.670)	8 (0.090)	6/144	NT	11.0%	coding (994/1161 nt)	metC	Cystathionine beta‑lyase MetC

Only 100 of 111 total aligned reads displayed.

TTTAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTG  >  USA300TCH1516_ALE/412041‑412221

tttAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCtt                                                                                            >  1:92189/1‑91 (MQ=255)

tttAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCtt                                                                                            >  1:1765037/1‑91 (MQ=255)

aagcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaat                                                                                            <  1:755066‑M1/1‑1 (MQ=255)

aagcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaat                                                                                            >  1:1310862‑M1/91‑91 (MQ=255)

 ttAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTg                                                                                           >  1:1236643/1‑91 (MQ=255)

  gcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGt                                                                                          >  1:2505941‑M1/89‑91 (MQ=255)

  gcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGt                                                                                          <  1:1823288‑M1/3‑1 (MQ=255)

  gcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGt                                                                                          <  1:1823187‑M1/3‑1 (MQ=255)

  gcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGt                                                                                          <  1:1749150‑M1/3‑1 (MQ=255)

   aaTGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGtc                                                                                         <  1:2540255/91‑1 (MQ=255)

     caacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGtctc                                                                                       <  1:968578‑M1/6‑1 (MQ=255)

     caacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGtctc                                                                                       >  1:1019537‑M1/86‑91 (MQ=255)

     caacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGtctc                                                                                       <  1:3950151‑M1/6‑1 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      >  1:1595298/1‑91 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      >  1:1595484/1‑91 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      >  1:3374788/1‑91 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      >  1:3374672/1‑91 (MQ=255)

       acaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCAc                                                                                     <  1:3067146‑M1/8‑1 (MQ=255)

       acaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCAc                                                                                     <  1:1627484‑M1/8‑1 (MQ=255)

         tATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCActt                                                                                   <  1:2964125/91‑1 (MQ=255)

          aTTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCActtc                                                                                  >  1:1866608/1‑91 (MQ=255)

              gATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCa                                                                              >  1:1703724/1‑91 (MQ=255)

              gATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCa                                                                              >  1:1704586/1‑91 (MQ=255)

                tGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAgg                                                                            <  1:2289417/91‑1 (MQ=255)

                tGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAgg                                                                            <  1:2289335/91‑1 (MQ=255)

                   cTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTAAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAg                                                                         >  1:3503003/1‑91 (MQ=255)

                    tGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGt                                                                        >  1:1134362/1‑91 (MQ=255)

                     gCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTg                                                                       >  1:2926165/1‑91 (MQ=255)

                      cAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGc                                                                      <  1:1670335/91‑1 (MQ=255)

                        tgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAg                                                                    >  1:14504‑M1/67‑91 (MQ=255)

                        aTGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAg                                                                    >  1:1537538/1‑91 (MQ=255)

                         gacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCGGGTAGTGCAGc                                                                   >  1:1694911‑M1/66‑91 (MQ=255)

                          gAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGCGCAGCg                                                                  >  1:1767096/1‑91 (MQ=255)

                           cattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGt                                                                 >  1:783451‑M1/64‑91 (MQ=255)

                           aGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGt                                                                 >  1:1302289/1‑91 (MQ=255)

                           aGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGt                                                                 >  1:1302255/1‑91 (MQ=255)

                            gTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTg                                                                >  1:2911629/1‑91 (MQ=255)

                            gTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTg                                                                >  1:2910890/1‑91 (MQ=255)

                            gTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTg                                                                <  1:38870/91‑1 (MQ=255)

                            gTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTg                                                                <  1:1232687/91‑1 (MQ=255)

                            attaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGTg                                                                >  1:2791595‑M1/63‑91 (MQ=255)

                             ttCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTga                                                               >  1:911756/1‑91 (MQ=255)

                              tcatcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTgag                                                              <  1:658962/91‑1 (MQ=255)

                              taccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGTgag                                                              >  1:486465‑M1/61‑91 (MQ=255)

                              taccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGTgag                                                              >  1:1719763‑M1/61‑91 (MQ=255)

                               catcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTgaga                                                             >  1:2979396/1‑91 (MQ=255)

                                atcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGAc                                                            <  1:902493/91‑1 (MQ=255)

                                  caGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAt                                                          <  1:3786382/91‑1 (MQ=255)

                                   aGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAtt                                                         <  1:17808/91‑1 (MQ=255)

                                   aGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAtt                                                         <  1:1133371/91‑1 (MQ=255)

                                    tcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttg                                                        >  1:3711334‑M1/55‑91 (MQ=255)

                                    ggATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttg                                                        <  1:2319338/91‑1 (MQ=255)

                                       tCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgttg                                                     <  1:3334924/91‑1 (MQ=255)

                                       tCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgttg                                                     <  1:1232158/91‑1 (MQ=255)

                                          tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                  <  1:2585095/91‑1 (MQ=255)

                                            gagaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGa                                                <  1:858724/91‑1 (MQ=255)

                                             agaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAt                                               >  1:3053088/1‑91 (MQ=255)

                                             agaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAt                                               >  1:3053655/1‑91 (MQ=255)

                                             agaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAt                                               >  1:1446714/1‑91 (MQ=255)

                                               aCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgt                                             >  1:621618/1‑91 (MQ=255)

                                                 cAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGa                                           >  1:2915797/1‑91 (MQ=255)

                                                  aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                          >  1:4006663/1‑91 (MQ=255)

                                                  aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                          >  1:4007165/1‑91 (MQ=255)

                                                  aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                          >  1:4008622/1‑91 (MQ=255)

                                                   acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                         <  1:3911928/91‑1 (MQ=255)

                                                   acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                         <  1:1968820/91‑1 (MQ=255)

                                                    cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                        >  1:2869040/1‑91 (MQ=255)

                                                    cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                        >  1:2868526/1‑91 (MQ=255)

                                                            cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                <  1:1354289/91‑1 (MQ=255)

                                                            cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                >  1:2537889/1‑91 (MQ=255)

                                                             ggAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTc                               >  1:3662981/1‑91 (MQ=255)

                                                              gAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCa                              <  1:324669/91‑1 (MQ=255)

                                                                aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                            >  1:1096955/1‑91 (MQ=255)

                                                                aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                            >  1:1569668/1‑91 (MQ=255)

                                                                aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                            >  1:2624903/1‑91 (MQ=255)

                                                                   gACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACAcc                         >  1:1606426/1‑91 (MQ=255)

                                                                    aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                        >  1:1883675/1‑91 (MQ=255)

                                                                    aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                        >  1:2530251/1‑91 (MQ=255)

                                                                    aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                        >  1:3638377/1‑91 (MQ=255)

                                                                     ccGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGc                       <  1:3588908/91‑1 (MQ=255)

                                                                      cGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGcc                      <  1:877646/91‑1 (MQ=255)

                                                                       gAAAGTGATACCCCGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCAccc                     >  1:3209378/1‑91 (MQ=255)

                                                                           gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                 >  1:305433/1‑91 (MQ=255)

                                                                           gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                 >  1:305334/1‑91 (MQ=255)

                                                                            tGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACt                <  1:676222/91‑1 (MQ=255)

                                                                            tGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACt                <  1:2460030/91‑1 (MQ=255)

                                                                             gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc               >  1:547315/1‑91 (MQ=255)

                                                                             gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc               >  1:3355195/1‑91 (MQ=255)

                                                                              aTACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCa              <  1:2800494/91‑1 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAGAGGATCGTTTCAACACCGCCCAGACTCAc             >  1:3326921/1‑91 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGACAGGATCGTTTCAACACCGCCCAGACTCAc             >  1:3327825/1‑91 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc             >  1:482019/1‑91 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc             >  1:756749/1‑91 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc             >  1:3049211/1‑91 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc             <  1:3347613/91‑1 (MQ=255)

                                                                                    cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa        >  1:1494870/1‑91 (MQ=255)

                                                                                     gTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAAc       >  1:2142168/1‑91 (MQ=255)

                                                                                     gTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAAc       >  1:3194261/1‑91 (MQ=255)

                                                                                       tCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGa     <  1:2105489/91‑1 (MQ=255)

                                                                                       tCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGa     <  1:2105389/91‑1 (MQ=255)

TTTAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTG  >  USA300TCH1516_ALE/412041‑412221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.