New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	412131 =	79 (0.800)	8 (0.090)	6/144	NT	11.0%	coding (1028/1161 nt)	metC	Cystathionine beta‑lyase MetC
	?	USA300TCH1516_ALE	412165 =	59 (0.670)					coding (994/1161 nt)	metC	Cystathionine beta‑lyase MetC

CAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT  >  USA300TCH1516_ALE/412075‑412254                                                                                           |                                                                                          caGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAt                                                                                           <  1:3786382/91‑1 (MQ=255)  aGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAtt                                                                                          <  1:1133371/91‑1 (MQ=255)  aGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAtt                                                                                          <  1:17808/91‑1 (MQ=255)   tcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttg                                                                                         >  1:3711334‑M1/55‑91 (MQ=255)   ggATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttg                                                                                         <  1:2319338/91‑1 (MQ=255)     aTCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgtt                                                                                       <  1:2274971/91‑1 (MQ=255)      tCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgttg                                                                                      <  1:3334924/91‑1 (MQ=255)      tCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgttg                                                                                      <  1:1232158/91‑1 (MQ=255)         tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                                                   <  1:2585095/91‑1 (MQ=255)           gagaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGa                                                                                 <  1:858724/91‑1 (MQ=255)            agaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAt                                                                                >  1:3053655/1‑91 (MQ=255)            agaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAt                                                                                >  1:1446714/1‑91 (MQ=255)            agaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAt                                                                                >  1:3053088/1‑91 (MQ=255)              aCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgt                                                                              >  1:621618/1‑91 (MQ=255)                cAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGa                                                                            >  1:2915797/1‑91 (MQ=255)                 aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                           >  1:4006663/1‑91 (MQ=255)                 aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                           >  1:4007165/1‑91 (MQ=255)                 aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                           >  1:4008622/1‑91 (MQ=255)                  acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                          <  1:3911928/91‑1 (MQ=255)                  acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                          <  1:1968820/91‑1 (MQ=255)                   cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                                                         >  1:2869040/1‑91 (MQ=255)                   cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                                                         >  1:2868526/1‑91 (MQ=255)                           cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                                                 >  1:2537889/1‑91 (MQ=255)                           cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                                                 <  1:1354289/91‑1 (MQ=255)                           cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                                                 <  1:1354113/91‑1 (MQ=255)                            ggAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTc                                                                >  1:3662981/1‑91 (MQ=255)                             gAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCa                                                               <  1:324669/91‑1 (MQ=255)                               aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                                                             >  1:1569668/1‑91 (MQ=255)                               aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                                                             >  1:2624903/1‑91 (MQ=255)                               aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                                                             >  1:1096955/1‑91 (MQ=255)                                  gACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACAcc                                                          >  1:1606426/1‑91 (MQ=255)                                   aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                                                         >  1:1883675/1‑91 (MQ=255)                                   aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                                                         >  1:3638377/1‑91 (MQ=255)                                   aCCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCg                                                         >  1:2530251/1‑91 (MQ=255)                                    ccGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGc                                                        <  1:3588908/91‑1 (MQ=255)                                     cGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGcc                                                       <  1:877646/91‑1 (MQ=255)                                      gAAAGTGATACCCCGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCAccc                                                      >  1:3209378/1‑91 (MQ=255)                                          gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                                                  >  1:305433/1‑91 (MQ=255)                                          gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                                                  >  1:305334/1‑91 (MQ=255)                                           tGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACt                                                 <  1:676222/91‑1 (MQ=255)                                           tGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACt                                                 <  1:2460030/91‑1 (MQ=255)                                            gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc                                                >  1:3355195/1‑91 (MQ=255)                                            gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc                                                >  1:547315/1‑91 (MQ=255)                                             aTACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCa                                               <  1:2800494/91‑1 (MQ=255)                                              tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAGAGGATCGTTTCAACACCGCCCAGACTCAc                                              >  1:3326921/1‑91 (MQ=255)                                              tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGACAGGATCGTTTCAACACCGCCCAGACTCAc                                              >  1:3327825/1‑91 (MQ=255)                                              tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                              >  1:3049211/1‑91 (MQ=255)                                              tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                              >  1:756749/1‑91 (MQ=255)                                              tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                              <  1:3347613/91‑1 (MQ=255)                                              tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                              >  1:482019/1‑91 (MQ=255)                                              tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                              >  1:2935879/1‑91 (MQ=255)                                                   cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa                                         >  1:1494870/1‑91 (MQ=255)                                                    gTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAAc                                        >  1:3194261/1‑91 (MQ=255)                                                    gTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAAc                                        >  1:3194288/1‑91 (MQ=255)                                                    gTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAAc                                        >  1:2142168/1‑91 (MQ=255)                                                      tCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGa                                      >  1:1614924/1‑91 (MQ=255)                                                      tCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGa                                      <  1:2105489/91‑1 (MQ=255)                                                      tCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGa                                      <  1:2105389/91‑1 (MQ=255)                                                      caatgtctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGa                                      >  1:3711334‑M2/38‑91 (MQ=255)                                                         TGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTg                                   <  1:1767325‑M1/91‑1 (MQ=255)                                                          GTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTgg                                  >  1:2472799‑M1/1‑91 (MQ=255)                                                          GTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTgg                                  <  1:3817173‑M1/91‑1 (MQ=255)                                                            ctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTa                                >  1:1719763‑M2/32‑91 (MQ=255)                                                            ctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTa                                >  1:486465‑M2/32‑91 (MQ=255)                                                            CTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGCGGTa                                <  1:3455714‑M1/91‑1 (MQ=255)                                                             TCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTaa                               >  1:2300552‑M1/1‑91 (MQ=255)                                                              cacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAAt                              >  1:2791595‑M2/30‑91 (MQ=255)                                                              CACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAAt                              <  1:3928011‑M1/91‑1 (MQ=255)                                                               acgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATg                             >  1:783451‑M2/29‑91 (MQ=255)                                                                CTTGTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTGATGt                            >  1:3269449‑M1/1‑91 (MQ=255)                                                                 gctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTc                           >  1:3998974‑M2/27‑91 (MQ=255)                                                                 gctgcactacccgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTc                           >  1:1694911‑M2/27‑91 (MQ=255)                                                                  ctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCa                          >  1:14504‑M2/26‑91 (MQ=255)                                                                   cttcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAg                         >  1:718966/1‑91 (MQ=255)                                                                     tcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTg                       >  1:2626563/1‑91 (MQ=255)                                                                      cAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGc                      <  1:865855/91‑1 (MQ=255)                                                                         gTAGTGTAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATc                   >  1:383994/1‑91 (MQ=255)                                                                         gTAGTGTAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATc                   >  1:383864/1‑91 (MQ=255)                                                                            gTGCAGCGTGAGACATTGTTGCTGGATGTGACAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAAAGTCAGTGCATAGAc                >  1:3741313/1‑91 (MQ=255)                                                                            gTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGAc                >  1:747823/1‑91 (MQ=255)                                                                              gCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACaa              >  1:1029985/1‑91 (MQ=255)                                                                               cAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACaaa             >  1:1788781/1‑91 (MQ=255)                                                                                   gtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgt         <  1:3067146‑M2/83‑1 (MQ=255)                                                                                   gtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgt         <  1:1627484‑M2/83‑1 (MQ=255)                                                                                     gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg       <  1:3950151‑M2/85‑1 (MQ=255)                                                                                     gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg       >  1:1019537‑M2/7‑91 (MQ=255)                                                                                     gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg       <  1:968578‑M2/85‑1 (MQ=255)                                                                                     gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg       <  1:969293‑M2/85‑1 (MQ=255)                                                                                        acaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGc    >  1:2505941‑M2/4‑91 (MQ=255)                                                                                        acaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGc    <  1:1823288‑M2/88‑1 (MQ=255)                                                                                        acaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGc    <  1:1823187‑M2/88‑1 (MQ=255)                                                                                        acaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGc    <  1:1749150‑M2/88‑1 (MQ=255)                                                                                          aTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCtt  <  1:754913‑M2/90‑1 (MQ=255)                                                                                          aTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCtt  <  1:755066‑M2/90‑1 (MQ=255)                                                                                          aTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCtt  >  1:1310862‑M2/2‑91 (MQ=255)                                                                                           |                                                                                          CAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT  >  USA300TCH1516_ALE/412075‑412254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.