BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	979658 =	112 (1.140)	9 (0.100)	4/144	NT	8.5%	coding (601/870 nt)	ampR	HTH‑type transcriptional activator AmpR
*	?	USA300TCH1516_ALE	979694 =	94 (1.060)	9 (0.100)	4/144	NT	8.5%	coding (565/870 nt)	ampR	HTH‑type transcriptional activator AmpR

Only 100 of 150 total aligned reads displayed.

CATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGCATAC  >  USA300TCH1516_ALE/979604‑979784

catcatTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACttat                                                                                            >  1:1006830/1‑91 (MQ=255)

aagagaataatcatcttctaactgaggcatctttatttgaaaaatacaaaataaTAAGTGATGACCAATATTCTGGATGGTTATCACttat                                                                                            >  1:64343‑M1/55‑91 (MQ=255)

  tcatTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACttatta                                                                                          >  1:1054663/1‑91 (MQ=255)

    atTGATAGAGAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTattatt                                                                                        <  1:3972704/91‑1 (MQ=255)

    atTGATAGAGAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTattatt                                                                                        <  1:3972720/91‑1 (MQ=255)

     ttGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                                       >  1:801048/1‑91 (MQ=255)

     ttGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                                       <  1:3975405/91‑1 (MQ=255)

     ttGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                                       <  1:499437/91‑1 (MQ=255)

     aataatcatcttctaactgaggcatctttatttgaaaaatacaaaataaTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                                       >  1:1039967‑M1/50‑91 (MQ=255)

     aataatcatcttctaactgaggcatctttatttgaaaaatacaaaataaTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                                       >  1:627025‑M1/50‑91 (MQ=255)

     aataatcatcttctaactgaggcatctttatttgaaaaatacaaaataaTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTAttt                                                                                       >  1:2584646‑M1/50‑91 (MQ=255)

       gatagataGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTg                                                                                     <  1:3332362/91‑1 (MQ=255)

          agatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAt                                                                                  >  1:759483/1‑91 (MQ=255)

           gatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAtt                                                                                 >  1:1573101/1‑91 (MQ=255)

           gatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAtt                                                                                 >  1:1573120/1‑91 (MQ=255)

           gatagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAtt                                                                                 <  1:2543078/91‑1 (MQ=255)

            atagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAttt                                                                                <  1:3684915/91‑1 (MQ=255)

            atagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAttt                                                                                <  1:273441/91‑1 (MQ=255)

             tagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAtttt                                                                               <  1:1860900/91‑1 (MQ=255)

             tagaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTAtttt                                                                               <  1:2589956/91‑1 (MQ=255)

               gaAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTc                                                                             <  1:2841216/91‑1 (MQ=255)

                aaaTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCa                                                                            <  1:3474155/91‑1 (MQ=255)

                 aaTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaa                                                                           >  1:1233831/1‑91 (MQ=255)

                 aaTTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCaa                                                                           >  1:1233816/1‑91 (MQ=255)

                     gtgCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCACTATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATaa                                                                       >  1:3303168/1‑91 (MQ=255)

                     gtgCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATaa                                                                       >  1:2055678/1‑91 (MQ=255)

                     gtgCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATaa                                                                       >  1:2055826/1‑91 (MQ=255)

                      tgCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATaaa                                                                      >  1:4027590/1‑91 (MQ=255)

                        cTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGa                                                                    <  1:4045263/91‑1 (MQ=255)

                        cTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGa                                                                    <  1:3852656/91‑1 (MQ=255)

                        cTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGa                                                                    <  1:1616654/91‑1 (MQ=255)

                        cTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGa                                                                    <  1:1616714/91‑1 (MQ=255)

                        cTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGa                                                                    <  1:196089/91‑1 (MQ=255)

                         tttttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGAt                                                                   <  1:40849/91‑1 (MQ=255)

                           tttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGc                                                                 >  1:412799/1‑91 (MQ=255)

                           tttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGc                                                                 <  1:2529355/91‑1 (MQ=255)

                            ttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGcc                                                                <  1:2292936/91‑1 (MQ=255)

                            ttCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGcc                                                                <  1:2984685/91‑1 (MQ=255)

                             tCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCt                                                               <  1:1746783/91‑1 (MQ=255)

                             tCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCt                                                               <  1:293722/91‑1 (MQ=255)

                             tCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCt                                                               <  1:560180/91‑1 (MQ=255)

                             tCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCt                                                               <  1:559708/91‑1 (MQ=255)

                               aTAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCa                                                             <  1:902735/91‑1 (MQ=255)

                                ataaTATTTTAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAg                                                            >  1:1543668/3‑91 (MQ=255)

                                    tatTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTag                                                        <  1:3994477/91‑1 (MQ=255)

                                    tatTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTag                                                        <  1:2666716/91‑1 (MQ=255)

                                       ttAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTagaag                                                     <  1:2469080/91‑1 (MQ=255)

                                        tAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTagaaga                                                    >  1:647422/1‑91 (MQ=255)

                                          aaaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgatg                                                  >  1:3032059/1‑91 (MQ=255)

                                          aaaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgatg                                                  >  1:2290670/1‑91 (MQ=255)

                                           aaTATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgatga                                                 <  1:3298968/91‑1 (MQ=255)

                                            tacaaaataataagtgataaccatccagaatattggtcatcacttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgatgat                                                >  1:2346447‑M2/47‑91 (MQ=255)

                                            atatTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAgatgat                                                >  1:530974/1‑91 (MQ=255)

                                              attattTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGatta                                              <  1:654282/91‑1 (MQ=255)

                                              attattTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGatta                                              <  1:2010219/91‑1 (MQ=255)

                                                aaataataagtgataaccatccagaatattggtcatctcttaTTATCTTGTATTTTTCACATAAAGATGCCTCAGTTAGAAGATGattatt                                            >  1:3307001‑M2/43‑91 (MQ=255)

                                                aaataataagtgataaccatccagaatattggtcatcacttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGattatt                                            >  1:627025‑M2/43‑91 (MQ=255)

                                                aaataataagtgataaccatccagaatattggtcatcacttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGattatt                                            >  1:2584646‑M2/43‑91 (MQ=255)

                                                 attTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATtc                                           >  1:1132801/1‑91 (MQ=255)

                                                  tttttAAGTGATGACCAATATGCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATtct                                          <  1:3146855/91‑1 (MQ=255)

                                                    tttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTctct                                        <  1:3238002/91‑1 (MQ=255)

                                                    tttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTctct                                        >  1:3260432/1‑91 (MQ=255)

                                                    tttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTctct                                        <  1:1918275/91‑1 (MQ=255)

                                                    tttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTctct                                        <  1:1434408/91‑1 (MQ=255)

                                                    tttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTctct                                        <  1:370163/91‑1 (MQ=255)

                                                     ttAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCtt                                       <  1:1485536/91‑1 (MQ=255)

                                                     ataagtgataaccatccagaatattggtcatcacttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCtt                                       >  1:64329‑M2/38‑91 (MQ=255)

                                                     ataagtgataaccatccagaatattggtcatcacttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCtt                                       >  1:1514362‑M2/38‑91 (MQ=255)

                                                      TAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCttt                                      >  1:3440653‑M1/1‑91 (MQ=255)

                                                      TAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCttt                                      >  1:1370926‑M1/1‑91 (MQ=255)

                                                        agtgataaccatccagaatattggtcatcacttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTAt                                    >  1:2415823‑M2/35‑91 (MQ=255)

                                                        AGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTAt                                    >  1:2267715‑M1/1‑91 (MQ=255)

                                                         GTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTAtt                                   <  1:3555055‑M1/91‑1 (MQ=255)

                                                             TGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGa                               >  1:3519248‑M1/1‑91 (MQ=255)

                                                               aCCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGc                             <  1:1719059/91‑1 (MQ=255)

                                                                  aaTATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaat                          >  1:972066/1‑91 (MQ=255)

                                                                   atatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatc                         >  1:3807430/1‑91 (MQ=255)

                                                                    tatTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatca                        <  1:1994068/91‑1 (MQ=255)

                                                                     atTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatcaa                       >  1:2816499/1‑91 (MQ=255)

                                                                     atTCTGGATGGTTATCACTTATTATTTTGCATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGcaatcaa                       <  1:2306920/91‑1 (MQ=255)

                                                                        cTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATAc                    <  1:2534096/91‑1 (MQ=255)

                                                                          ggATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACaa                  >  1:3674046/1‑91 (MQ=255)

                                                                          ggATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACaa                  >  1:2196199/1‑91 (MQ=255)

                                                                            aTGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAtt                <  1:1856325/91‑1 (MQ=255)

                                                                             tGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAttt               >  1:150760/1‑91 (MQ=255)

                                                                             tGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAttt               <  1:2199557/91‑1 (MQ=255)

                                                                             tGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAttt               <  1:2418718/91‑1 (MQ=255)

                                                                              ggTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAtttt              >  1:2365215/1‑91 (MQ=255)

                                                                              ggTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAAtttt              <  1:754561/91‑1 (MQ=255)

                                                                               gTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTa             >  1:274461/1‑91 (MQ=255)

                                                                               gTTATCACTTATTATTATGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTa             >  1:3090978/1‑91 (MQ=255)

                                                                                   tcacttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCtt         >  1:792522‑M2/8‑91 (MQ=255)

                                                                                      cttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGc      <  1:232974‑M2/87‑1 (MQ=255)

                                                                                      cttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGc      <  1:2626405‑M2/87‑1 (MQ=255)

                                                                                      cttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGc      <  1:2946328‑M2/87‑1 (MQ=255)

                                                                                       ttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGCa     <  1:2285411‑M2/88‑1 (MQ=255)

                                                                                       ttaTTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGCa     <  1:276028‑M2/88‑1 (MQ=255)

                                                                                          ttattTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGCATAc  >  1:2509818/1‑91 (MQ=255)

                                                                                          ttattTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGCATAc  >  1:2510123/1‑91 (MQ=255)

                                                                                          ttattTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGCATAc  <  1:3502702/91‑1 (MQ=255)

CATCATTGATAGATAGAAATTGTGCTTTTTCATAAATATTTAAAATATTATTTTTAAGTGATGACCAATATTCTGGATGGTTATCACTTATTATTTTGTATTTTTCAAATAAAGATGCCTCAGTTAGAAGATGATTATTCTCTTTATTGGGAGCAATCAATACAATTTTACCTTCGCATAC  >  USA300TCH1516_ALE/979604‑979784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.