BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1217693	92 (0.940)	5 (0.060)	5/128	NT	5.9%	intergenic (+22/‑415)	USA300HOU_RS06060/USA300HOU_RS06065	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1217729	87 (1.110)	5 (0.060)	5/128	NT	5.9%	intergenic (+58/‑379)	USA300HOU_RS06060/USA300HOU_RS06065	hypothetical protein/hypothetical protein

Only 100 of 126 total aligned reads displayed.

AGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGA  >  USA300TCH1516_ALE/1217640‑1217818

aGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACa                                                                                          <  1:2102857‑M2/91‑2 (MQ=255)

 ggATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaa                                                                                         >  1:3521761‑M2/1‑89 (MQ=255)

  gATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaa                                                                                        <  1:2795450‑M2/91‑4 (MQ=255)

  gATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaa                                                                                        >  1:821197‑M2/1‑88 (MQ=255)

   atatatTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaac                                                                                       >  1:1371163‑M2/1‑87 (MQ=255)

     atatTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacac                                                                                     >  1:3016116‑M2/1‑85 (MQ=255)

     atatTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacac                                                                                     >  1:332543‑M2/1‑85 (MQ=255)

      tatTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacact                                                                                    >  1:2518565‑M2/1‑84 (MQ=255)

       atTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacacta                                                                                   <  1:878849‑M2/91‑9 (MQ=255)

        ttACGTAAACAAGAACAAATTTAAAAACACAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactat                                                                                  >  1:2060660‑M2/1‑82 (MQ=255)

        ttACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactat                                                                                  <  1:1158913‑M2/91‑10 (MQ=255)

        ttACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactat                                                                                  <  1:3138382‑M2/91‑10 (MQ=255)

        ttACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactat                                                                                  >  1:3819163‑M2/1‑82 (MQ=255)

         tACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactata                                                                                 <  1:1773585‑M2/91‑11 (MQ=255)

            gTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactatagct                                                                              <  1:197293‑M2/91‑14 (MQ=255)

                aCAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTtta                                                                          >  1:3014853/1‑91 (MQ=255)

                 cAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTttat                                                                         >  1:1916744/1‑91 (MQ=255)

                  aaGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTttatt                                                                        >  1:445370/1‑91 (MQ=255)

                   aGAACAAGTTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTttatta                                                                       <  1:2069576/91‑1 (MQ=255)

                   aGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTttatta                                                                       >  1:153922/1‑91 (MQ=255)

                    gAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTtattat                                                                      <  1:876193/91‑1 (MQ=255)

                       cAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATtatata                                                                   <  1:1365855/91‑1 (MQ=255)

                           tttAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATaaaaa                                                               >  1:1811263/1‑91 (MQ=255)

                             tAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAt                                                             <  1:94290/91‑1 (MQ=255)

                             tAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAt                                                             <  1:4001682/91‑1 (MQ=255)

                             tAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAt                                                             <  1:1543922/91‑1 (MQ=255)

                              aaaaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAtt                                                            <  1:4068635/91‑1 (MQ=255)

                              aaaaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAtt                                                            >  1:2269108/1‑91 (MQ=255)

                               aaaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAttt                                                           >  1:1991035/1‑91 (MQ=255)

                               aaaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAttt                                                           <  1:2871275/91‑1 (MQ=255)

                               aaaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAAttt                                                           <  1:928083/91‑1 (MQ=255)

                               aaaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCAGCCTAATATTACAAACACTATAGCTTTTATTATATAAAAAAttt                                                           <  1:3444499/91‑1 (MQ=255)

                                aaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATtta                                                          <  1:3951945/91‑1 (MQ=255)

                                 aaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATttat                                                         <  1:138670/91‑1 (MQ=255)

                                   cAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATttatta                                                       >  1:2447184/1‑91 (MQ=255)

                                    aaaaaaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAg                                                      >  1:1666365/1‑91 (MQ=255)

                                      aaaaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCTAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCg                                                    <  1:4139665/91‑1 (MQ=255)

                                      aaaaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAATAATTTATTAGCg                                                    <  1:3178190/91‑1 (MQ=255)

                                      aaaaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCg                                                    <  1:1932797/91‑1 (MQ=255)

                                       aaaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCgg                                                   >  1:633686/1‑91 (MQ=255)

                                       aaaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCgg                                                   >  1:2566840/1‑91 (MQ=255)

                                        aaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGa                                                  <  1:1998778/91‑1 (MQ=255)

                                        aaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGa                                                  <  1:1998684/91‑1 (MQ=255)

                                        aaGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGa                                                  <  1:1996278/91‑1 (MQ=255)

                                         aGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGAt                                                 <  1:1279313/91‑1 (MQ=255)

                                          gCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactatagcttttttgtttttaaatttgttcttgtttacg                                                <  1:2419844‑M2/91‑44 (MQ=255)

                                           cTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactatagcttttttgtttttaaatttgttcttgtttacgt                                               <  1:442106‑M2/91‑45 (MQ=255)

                                           cTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATaa                                               <  1:2224207/91‑1 (MQ=255)

                                           cTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATaa                                               >  1:537935/1‑91 (MQ=255)

                                            tataGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAAt                                              >  1:3634767/1‑91 (MQ=255)

                                            tataGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAAt                                              <  1:1064241/91‑1 (MQ=255)

                                             ataGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactatagcttttttgtttttaaatttgttcttgtttacgtaa                                             <  1:653444‑M2/91‑47 (MQ=255)

                                              taGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactatagcttttttgtttttaaatttgttcttgtttacgtaat                                            <  1:534435‑M2/91‑48 (MQ=255)

                                              taGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTa                                            >  1:1785763/1‑91 (MQ=255)

                                              taGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTa                                            >  1:1855914/1‑91 (MQ=255)

                                                gtgtTTAATATCAGGGGCTGCTTAACCGCATCCTAATATTACAAACACTATAGCTTTTAGTATATAAAAAATTTATTAGCGGATAATTAAc                                          <  1:3685987/91‑1 (MQ=255)

                                                gtgtTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAAc                                          <  1:747196/91‑1 (MQ=255)

                                                gtgtTTAATATCAGGGGCTGCTTAACCGCATCCCAATATTACAAACACTATAGCTTTTAGTATATAAAAAATTTATTAGCGGATAATTAAc                                          <  1:3686297/91‑1 (MQ=255)

                                                 tgtTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACt                                         <  1:736147/91‑1 (MQ=255)

                                                   tttAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACttt                                       <  1:3030183/91‑1 (MQ=255)

                                                     tAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaaacactatagcttttttgtttttaaatttgttcttgtttacgtaatatatcct                                     <  1:731758‑M2/91‑55 (MQ=255)

                                                      aaTATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTttatt                                    >  1:3113751/1‑91 (MQ=255)

                                                      aaTATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTttatt                                    >  1:2944061/1‑91 (MQ=255)

                                                      aaTATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTttatt                                    <  1:3445847/91‑1 (MQ=255)

                                                         atCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTaaa                                 <  1:2822083/91‑1 (MQ=255)

                                                          tCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTaaaa                                >  1:2331480/1‑91 (MQ=255)

                                                          tCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTaaaa                                >  1:1819283/1‑91 (MQ=255)

                                                            aGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                              >  1:3119268/1‑91 (MQ=255)

                                                            aGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                              >  1:52758/1‑91 (MQ=255)

                                                            aGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                              >  1:3119380/1‑91 (MQ=255)

                                                            aGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                              <  1:692066/91‑1 (MQ=255)

                                                            aGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                              >  1:1811617/1‑91 (MQ=255)

                                                            aGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                              >  1:3119929/1‑91 (MQ=255)

                                                            aGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                              >  1:2706054/1‑91 (MQ=255)

                                                             ggggCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATcc                             <  1:562153/91‑1 (MQ=255)

                                                             ggggCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATcc                             <  1:3240388/91‑1 (MQ=255)

                                                               ggCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaa                           <  1:344587/91‑1 (MQ=255)

                                                                 ctgctTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaacc                         >  1:1880710/1‑91 (MQ=255)

                                                                 ctgctTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaacc                         >  1:1880504/1‑91 (MQ=255)

                                                                 ctgctTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaacc                         >  1:2160624/1‑91 (MQ=255)

                                                                   gctTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaaccaa                       >  1:3669221/1‑91 (MQ=255)

                                                                   gctTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaaccaa                       >  1:2536485/1‑91 (MQ=255)

                                                                     ttAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAAtt                     <  1:3786870/91‑1 (MQ=255)

                                                                      tAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAACTCCAACCAATTa                    <  1:3180549/91‑1 (MQ=255)

                                                                      tAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTa                    <  1:2098706/91‑1 (MQ=255)

                                                                      tAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTa                    <  1:1717818/91‑1 (MQ=255)

                                                                         ccGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGa                 <  1:1676800/91‑1 (MQ=255)

                                                                         ccGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGa                 >  1:3804971/1‑91 (MQ=255)

                                                                         ccGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGa                 >  1:1723488/1‑91 (MQ=255)

                                                                             aTCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATAc             >  1:1034391/1‑91 (MQ=255)

                                                                                  aaTATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTa        >  1:121067/1‑91 (MQ=255)

                                                                                  aaTATTACAAACACTATAGCTTTTACTATATAAAAAATTTATTAGCGGATACTTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTa        >  1:3420709/1‑91 (MQ=255)

                                                                                   atatTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTaa       <  1:115112/91‑1 (MQ=255)

                                                                                    tatTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAAt      <  1:3137317/91‑1 (MQ=255)

                                                                                       tACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAgg   >  1:1488282/1‑91 (MQ=255)

                                                                                        aCAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGa  <  1:3980008/91‑1 (MQ=255)

                                                                                        aCAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGa  <  1:3978729/91‑1 (MQ=255)

                                                                                        aCAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGa  <  1:334892/91‑1 (MQ=255)

                                                                                        aCAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGa  <  1:257678/91‑1 (MQ=255)

                                                                                        aCAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGa  >  1:2666627/1‑91 (MQ=255)

AGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGA  >  USA300TCH1516_ALE/1217640‑1217818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.