BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1279936 =	101 (1.030)	16 (0.240) +TTTGAAAATTATACGCAATATTAAC	6/110	NT	18.5%	intergenic (+29/‑233)	cdsA/USA300HOU_RS06360	Phosphatidate cytidylyltransferase/Putative zinc metalloprotease
*	?	USA300TCH1516_ALE	1279975 =	104 (1.060)	16 (0.240) +TTTGAAAATTATACGCAATATTAAC	6/110	NT	18.5%	intergenic (+68/‑194)	cdsA/USA300HOU_RS06360	Phosphatidate cytidylyltransferase/Putative zinc metalloprotease

Only 100 of 137 total aligned reads displayed.

ATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGT  >  USA300TCH1516_ALE/1279885‑1280065

atatTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtt                                                                                            <  1:329726/91‑1 (MQ=255)

atatTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtt                                                                                            >  1:391926/1‑91 (MQ=255)

     ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                                       >  1:1975237/1‑91 (MQ=255)

     ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                                                       >  1:1857726/1‑91 (MQ=255)

      tattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaaa                                                                                      <  1:3706225/91‑1 (MQ=255)

       attaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaaaa                                                                                     >  1:270304/1‑91 (MQ=255)

        ttgcgtataattttcaaaaggagttctgagattcattaaattatctcagcaactccttttgaaaattatacgcaatattaacTTTGAAAAt                                                                                    >  1:4099149‑M2/83‑91 (MQ=255)

            tACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATtata                                                                                <  1:356230/91‑1 (MQ=255)

             aCAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATAc                                                                               >  1:9046/1‑91 (MQ=255)

             aCAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATAc                                                                               >  1:8864/1‑91 (MQ=255)

             aCAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATAc                                                                               <  1:680628/91‑1 (MQ=255)

              cAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACg                                                                              <  1:3906605/91‑1 (MQ=255)

               aaTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTACACGc                                                                             >  1:3459989/1‑91 (MQ=255)

                 tCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCaa                                                                           >  1:1615245/1‑91 (MQ=255)

                 attttcaaagttaatattgcgtataattttcaaaAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCaa                                                                           >  1:4099149‑M1/35‑91 (MQ=255)

                   ttAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAata                                                                         >  1:366691/1‑91 (MQ=255)

                     aaTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATAtt                                                                       >  1:3738429/1‑91 (MQ=255)

                     aaTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATAtt                                                                       >  1:3247566/1‑91 (MQ=255)

                        gCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAAc                                                                    >  1:398816/1‑91 (MQ=255)

                        gCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAAc                                                                    >  1:2856393/1‑91 (MQ=255)

                         cTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATAGGCAATATTAACt                                                                   <  1:3203860/91‑1 (MQ=255)

                           gagaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACttt                                                                 <  1:738338/91‑1 (MQ=255)

                             agttctgagattcattaaattatctcagcaactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGa                                                               >  1:1935527‑M2/62‑91 (MQ=255)

                              gttctgagattcattaaattatctcagcaactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGaa                                                              >  1:1486430‑M2/61‑91 (MQ=255)

                              gttctgagattcattaaattatctcagcaactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGaa                                                              >  1:2937138‑M2/61‑91 (MQ=255)

                               aCAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaaa                                                             >  1:3985223/1‑91 (MQ=255)

                               aCAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaaa                                                             >  1:3055648/1‑91 (MQ=255)

                               aCAAATCAATAAACGTAAAGAGGAGTTGCAGAGATAATTTAATGAATTTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaaa                                                             >  1:3063910/1‑91 (MQ=255)

                                  aaTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                                          <  1:2693450/91‑1 (MQ=255)

                                  aaTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                                          <  1:2693451/91‑1 (MQ=255)

                                     cAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtata                                                       <  1:190343/91‑1 (MQ=255)

                                      attcattaaattatctcagcaactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATAc                                                      >  1:2438639‑M2/53‑91 (MQ=255)

                                      aaTAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATAc                                                      >  1:205494/1‑91 (MQ=255)

                                      aaTAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATAc                                                      >  1:1875446/1‑91 (MQ=255)

                                       aTAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACg                                                     >  1:3840688/1‑91 (MQ=255)

                                       aTAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACg                                                     >  1:3839776/1‑91 (MQ=255)

                                           aCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                                                 <  1:589418/91‑1 (MQ=255)

                                           aCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                                                 <  1:590815/91‑1 (MQ=255)

                                            cGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAata                                                >  1:152580/1‑91 (MQ=255)

                                            cGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAata                                                >  1:3392124/1‑91 (MQ=255)

                                            cGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAata                                                <  1:687962/91‑1 (MQ=255)

                                               aaaGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa                                             >  1:3120573/1‑91 (MQ=255)

                                                 agagGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAAc                                           <  1:3918700/91‑1 (MQ=255)

                                                   aggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt                                         >  1:206743/1‑91 (MQ=255)

                                                    ggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt                                        >  1:3644725/1‑91 (MQ=255)

                                                     gagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg                                       >  1:524923/1‑91 (MQ=255)

                                                     gagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg                                       >  1:343736/1‑91 (MQ=255)

                                                     gagTTGCTGAGATAATTTAACGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg                                       <  1:1119951/91‑1 (MQ=255)

                                                      agTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGa                                      <  1:543714/91‑1 (MQ=255)

                                                      agTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTCTGa                                      >  1:3345354/1‑91 (MQ=255)

                                                       gTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa                                     <  1:3528945/91‑1 (MQ=255)

                                                       gTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaa                                     >  1:1142105/1‑91 (MQ=255)

                                                        ttGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaa                                    <  1:2995373/91‑1 (MQ=255)

                                                        ttGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaa                                    <  1:2313131/91‑1 (MQ=255)

                                                        ttGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaa                                    <  1:2313221/91‑1 (MQ=255)

                                                        ttGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGaaa                                    >  1:1983468/1‑91 (MQ=255)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  <  1:2518016/91‑1 (MQ=255)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  <  1:2515975/91‑1 (MQ=255)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  <  1:674102/91‑1 (MQ=255)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  <  1:2905419/91‑1 (MQ=255)

                                                          gCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  <  1:2393967/91‑1 (MQ=255)

                                                          aactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  <  1:3250820‑M2/59‑1 (MQ=255)

                                                          aactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  >  1:2696282‑M2/33‑91 (MQ=255)

                                                          aactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  >  1:608438‑M2/33‑91 (MQ=255)

                                                          aactccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAt                                  >  1:1714474‑M2/33‑91 (MQ=255)

                                                           actccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGCAAAtt                                 >  1:2153239‑M2/32‑91 (MQ=255)

                                                           actccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                 >  1:3610334‑M2/32‑91 (MQ=255)

                                                           actccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAtt                                 <  1:3086836‑M2/60‑1 (MQ=255)

                                                            tGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATta                                >  1:2459503/1‑91 (MQ=255)

                                                            ctccttttgaaaattatacgcaatattaacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAACATta                                >  1:3458841‑M2/31‑91 (MQ=255)

                                                            ctccttttgaaaattatacgcaataataacTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATta                                <  1:3869145‑M2/61‑1 (MQ=255)

                                                              agaTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATtata                              >  1:1636480/1‑91 (MQ=255)

                                                              agaTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATtata                              >  1:2247717/1‑91 (MQ=255)

                                                              agaTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATtata                              >  1:1677676/1‑91 (MQ=255)

                                                               gaTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATAc                             >  1:289485/1‑91 (MQ=255)

                                                                aTAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACg                            >  1:2665951/1‑91 (MQ=255)

                                                                   aTTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa                         >  1:1581203/1‑91 (MQ=255)

                                                                    tttAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                        <  1:3717673/91‑1 (MQ=255)

                                                                    tttAATGAATCTCAGAACACCTTTTGAAAAAAATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat                        <  1:1179987/91‑1 (MQ=255)

                                                                     ttAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCtata                       >  1:3276079/1‑91 (MQ=255)

                                                                      tAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat                      >  1:3074537/1‑91 (MQ=255)

                                                                      tAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat                      >  1:702812/1‑91 (MQ=255)

                                                                       aaTGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATAtt                     <  1:3064794/91‑1 (MQ=255)

                                                                        aTGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa                    >  1:3486109/1‑91 (MQ=255)

                                                                          gAATGTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAAc                  <  1:3453145/91‑1 (MQ=255)

                                                                           aaTCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACt                 <  1:2783026/91‑1 (MQ=255)

                                                                             tctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt               >  1:4020878/1‑91 (MQ=255)

                                                                             tctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACttt               >  1:2925555/1‑91 (MQ=255)

                                                                              ctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg              >  1:3381214/1‑91 (MQ=255)

                                                                              ctcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTg              <  1:2945674/91‑1 (MQ=255)

                                                                               tcAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGa             <  1:512954/91‑1 (MQ=255)

                                                                                      tCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAg      >  1:1497162/1‑91 (MQ=255)

                                                                                        cTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGAc    <  1:1219197/91‑1 (MQ=255)

                                                                                        cTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGAc    >  1:2993124/1‑91 (MQ=255)

                                                                                        cTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGAc    <  1:1218431/91‑1 (MQ=255)

                                                                                        cTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGAc    <  1:1789270/91‑1 (MQ=255)

                                                                                         ttttGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACg   <  1:1806672/91‑1 (MQ=255)

                                                                                          tttGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGt  <  1:2735863/91‑1 (MQ=255)

                                                                                          tttGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGt  <  1:2736058/91‑1 (MQ=255)

                                                                                          tttGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGt  <  1:1060287/91‑1 (MQ=255)

ATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTAGACGT  >  USA300TCH1516_ALE/1279885‑1280065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.