BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1758568 =	124 (1.260)	6 (0.070)	4/140	NT	5.6%	intergenic (‑141/+252)	mreC/USA300HOU_RS08780	Cell shape‑determining protein MreC/hypothetical protein
*	?	USA300TCH1516_ALE	1758603 =	92 (1.070)	6 (0.070)	4/140	NT	5.6%	intergenic (‑176/+217)	mreC/USA300HOU_RS08780	Cell shape‑determining protein MreC/hypothetical protein

Only 100 of 163 total aligned reads displayed.

ATTACTTTGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAATAAG  >  USA300TCH1516_ALE/1758513‑1758693

cagtgaatcctcgaacgatacaaacaaataattttaaaatttaaatcgattatttAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTa                                                                                            >  1:1065515‑M1/56‑91 (MQ=255)

cagtgaatcctcgaacgatacaaacaaataattttaaaatttaaatcgattatttAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTa                                                                                            >  1:3419130‑M1/56‑91 (MQ=255)

aTTACTTTGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTa                                                                                            <  1:1707310/91‑1 (MQ=255)

aTTACTTTGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTa                                                                                            <  1:1707294/91‑1 (MQ=255)

 ttACTTTGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTaa                                                                                           <  1:2511015/91‑1 (MQ=255)

    cTTTGAAAATGGACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAaata                                                                                        >  1:3828021/1‑91 (MQ=255)

    cTTTGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAaata                                                                                        >  1:4011854/1‑91 (MQ=255)

    cTTTGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAaata                                                                                        >  1:1545881/1‑91 (MQ=255)

     tttGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAaataa                                                                                       <  1:1515140/91‑1 (MQ=255)

      ttGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAaataat                                                                                      >  1:1019580/1‑91 (MQ=255)

         aaaaTGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGa                                                                                   <  1:608983/91‑1 (MQ=255)

          aaaTGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGAt                                                                                  <  1:24627/91‑1 (MQ=255)

          aaaTGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGAt                                                                                  >  1:1754456/1‑91 (MQ=255)

          aaaTGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGAt                                                                                  >  1:478902/1‑91 (MQ=255)

          aaaTGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGAt                                                                                  <  1:3047152/91‑1 (MQ=255)

           aaTGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGAtt                                                                                 <  1:1577845/91‑1 (MQ=255)

             tGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTa                                                                               <  1:3303848/91‑1 (MQ=255)

              gAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTaa                                                                              <  1:2582770/91‑1 (MQ=255)

               aacaacTCCGTAAAAATTTTGTGGCATTTTAAAATCAAAAAAACTACTAGCAAACATTCCAGTCACCAGTAGTTTACTTAATCGATTTaca                                                                             >  1:1663342/1‑89 (MQ=255)

               aacaacTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTaaa                                                                             >  1:1114404/1‑91 (MQ=255)

                acaacTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAAt                                                                            >  1:267955/1‑91 (MQ=255)

                acaacTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAAt                                                                            <  1:1730844/91‑1 (MQ=255)

                acaacTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAAt                                                                            >  1:1522467/1‑91 (MQ=255)

                 caacTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAAtt                                                                           >  1:3508499/1‑91 (MQ=255)

                  aacTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAAttt                                                                          >  1:2820614/1‑91 (MQ=255)

                    cTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTa                                                                        >  1:3961574/1‑91 (MQ=255)

                        gTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAat                                                                    <  1:208686/91‑1 (MQ=255)

                        gTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAat                                                                    <  1:591232/91‑1 (MQ=255)

                           aaaaaTTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAattat                                                                 >  1:1987903/1‑91 (MQ=255)

                           aaaaaTTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAattat                                                                 >  1:739057/1‑91 (MQ=255)

                           aaaaaTTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAattat                                                                 >  1:2522162/1‑91 (MQ=255)

                               aTTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTAtttgt                                                             <  1:1355647/91‑1 (MQ=255)

                                tttGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTAtttgtt                                                            >  1:2995407/1‑91 (MQ=255)

                                 ttGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTACATAATCGATTTAAATTTTAAAATTAtttgttt                                                           >  1:2876691/1‑91 (MQ=255)

                                 ttGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTAtttgttt                                                           >  1:2876791/1‑91 (MQ=255)

                                  tgtgGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTAtttgtttg                                                          >  1:4116236/1‑91 (MQ=255)

                                  tgtgGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTAtttgtttg                                                          >  1:757902/1‑91 (MQ=255)

                                   gtgGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATttgtttgt                                                         <  1:2843364/91‑1 (MQ=255)

                                   gtgGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATttgtttgt                                                         <  1:1029823/91‑1 (MQ=255)

                                    tgGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTa                                                        <  1:787059/91‑1 (MQ=255)

                                    tgGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTa                                                        >  1:1901396/1‑91 (MQ=255)

                                         ttttAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGtt                                                   >  1:1621087/1‑91 (MQ=255)

                                         ttttAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGtt                                                   <  1:167307/91‑1 (MQ=255)

                                           ttAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCg                                                 <  1:2855763/91‑1 (MQ=255)

                                               aaaCAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGa                                             >  1:4120606/1‑91 (MQ=255)

                                                aaCAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGAt                                            <  1:2452443/91‑1 (MQ=255)

                                                aaCAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGAt                                            <  1:30594/91‑1 (MQ=255)

                                                aaCAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGAt                                            <  1:1445132/91‑1 (MQ=255)

                                                 aCAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGAtt                                           >  1:3915743/1‑91 (MQ=255)

                                                    aaaaaaCTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCAc                                        >  1:3933664/1‑91 (MQ=255)

                                                     ttaaactactagtgactggaatgtttgctagtagtttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACt                                       >  1:1596354‑M2/38‑91 (MQ=255)

                                                     aaaaaCTACTCGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAGCTTTTTAAATTAGTTGTTTGTATCGTTCGAGGATTCACt                                       <  1:1072493/91‑1 (MQ=255)

                                                     aaaaaCTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACt                                       <  1:2299859/91‑1 (MQ=255)

                                                     aaaaaCTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACt                                       <  1:2300251/91‑1 (MQ=255)

                                                       AAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGt                                     <  1:3060688‑M1/91‑1 (MQ=255)

                                                        aactactagtgactggaatgtttgctagtagtttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGtt                                    >  1:3077989‑M2/35‑91 (MQ=255)

                                                        AACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGtt                                    <  1:1238956‑M1/91‑1 (MQ=255)

                                                        AACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGtt                                    <  1:2294444‑M1/91‑1 (MQ=255)

                                                        AACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGtt                                    >  1:222588‑M1/1‑91 (MQ=255)

                                                        AACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGtt                                    <  1:1924575‑M1/91‑1 (MQ=255)

                                                         ACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTc                                   >  1:413783‑M1/1‑91 (MQ=255)

                                                          CTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCg                                  >  1:2605229‑M1/1‑91 (MQ=255)

                                                          CTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCg                                  >  1:1148701‑M1/1‑91 (MQ=255)

                                                          CTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCg                                  >  1:2381647‑M1/1‑91 (MQ=255)

                                                           TACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGa                                 >  1:1340006‑M1/1‑91 (MQ=255)

                                                           TACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGa                                 >  1:2418831‑M1/1‑91 (MQ=255)

                                                             CTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCgaag                               >  1:1045447‑M1/1‑90 (MQ=255)

                                                             CTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAAt                               >  1:3208735‑M1/1‑91 (MQ=255)

                                                             CTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAAt                               >  1:763920‑M1/1‑91 (MQ=255)

                                                               AGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTc                             >  1:677750‑M1/1‑91 (MQ=255)

                                                                GCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCt                            >  1:3875838‑M1/1‑91 (MQ=255)

                                                                 cAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTg                           <  1:344468/91‑1 (MQ=255)

                                                                  aaaCATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGa                          <  1:16861/91‑1 (MQ=255)

                                                                  aaaCATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGa                          <  1:558794/91‑1 (MQ=255)

                                                                       ttCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTg                     <  1:2066754/91‑1 (MQ=255)

                                                                         ccAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtc                   >  1:555177/1‑91 (MQ=255)

                                                                         ccAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtc                   >  1:2757958/1‑91 (MQ=255)

                                                                         ccAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtc                   <  1:14305/91‑1 (MQ=255)

                                                                         ccAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtc                   >  1:2693882/1‑91 (MQ=255)

                                                                         ccAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtc                   >  1:3412082/1‑91 (MQ=255)

                                                                         ccAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGATGtc                   >  1:3454459/1‑91 (MQ=255)

                                                                         ccAGTCACTAGTAGTTTAAATAAGCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtc                   <  1:859691/91‑1 (MQ=255)

                                                                           aGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtctc                 >  1:3747424/1‑91 (MQ=255)

                                                                           aGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtctc                 <  1:4673/91‑1 (MQ=255)

                                                                           aGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtctc                 <  1:4542/91‑1 (MQ=255)

                                                                           aGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGtctc                 >  1:3747451/1‑91 (MQ=255)

                                                                            gTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTcc                >  1:3540518/1‑91 (MQ=255)

                                                                            gTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTcc                >  1:3542548/1‑91 (MQ=255)

                                                                             tCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCa               <  1:2633818/91‑1 (MQ=255)

                                                                                  agtagtttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTg          >  1:3339965‑M2/9‑91 (MQ=255)

                                                                                  agtagtttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTg          >  1:1801862‑M2/9‑91 (MQ=255)

                                                                                   gtagtttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGc         >  1:709104‑M2/8‑91 (MQ=255)

                                                                                     agtttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGa       >  1:3691735‑M2/6‑91 (MQ=255)

                                                                                      gtttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGaa      <  1:2514176‑M2/87‑1 (MQ=255)

                                                                                       tttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAAt     <  1:2521639‑M2/88‑1 (MQ=255)

                                                                                       tttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAAt     <  1:2218926‑M2/88‑1 (MQ=255)

                                                                                        ttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAATa    <  1:3018215‑M2/89‑1 (MQ=255)

                                                                                        ttAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAATa    >  1:2955650‑M2/3‑91 (MQ=255)

                                                                                         tAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAATaa   >  1:3269135‑M2/2‑91 (MQ=255)

                                                                                          aaaTAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAATAAg  >  1:2188857/1‑91 (MQ=255)

ATTACTTTGAAAATGAACAACTCCGTAAAAAATTTGTGGCATTTTAAAAACAAAAAAACTACTAGCAAACATTCCAGTCACTAGTAGTTTAAATAATCGATTTAAATTTTAAAATTATTTGTTTGTATCGTTCGAGGATTCACTGTTCGAATTCTGAAGTTGTCTCCAACGTGCGAATAAG  >  USA300TCH1516_ALE/1758513‑1758693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.