BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1759680	90 (0.920)	8 (0.100)	7/132	NT	10.5%	intergenic (‑387/+87)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1759708	62 (0.760)	8 (0.100)	7/132	NT	10.5%	intergenic (‑415/+59)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein

Only 100 of 128 total aligned reads displayed.

GGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATC  >  USA300TCH1516_ALE/1759618‑1759798

ggATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                                            <  1:2624317/91‑1 (MQ=255)

ggATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                                            >  1:1511895/1‑91 (MQ=255)

ggATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                                            <  1:2576174/91‑1 (MQ=255)

agtaatagtaatctgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                                            >  1:481390‑M1/50‑91 (MQ=255)

    atagtaatctgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACAt                                                                                        >  1:2255385‑M1/46‑91 (MQ=255)

     tttACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacatt                                                                                       <  1:3920114‑M2/91‑6 (MQ=255)

     tttACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacatt                                                                                       >  1:1837471‑M2/1‑86 (MQ=255)

     tttACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacatt                                                                                       >  1:2413438‑M2/1‑86 (MQ=255)

     tagtaatctgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACAtt                                                                                       <  1:1233614‑M1/47‑1 (MQ=255)

       tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                                                     <  1:533624‑M2/91‑8 (MQ=255)

       tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                                                     <  1:534016‑M2/91‑8 (MQ=255)

       tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                                                     <  1:534230‑M2/91‑8 (MQ=255)

        taatctgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAgg                                                                                    >  1:2018047‑M1/42‑91 (MQ=255)

          cGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggag                                                                                  <  1:571031‑M2/91‑11 (MQ=255)

           gCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagt                                                                                 <  1:1723304‑M2/91‑12 (MQ=255)

           gCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagt                                                                                 <  1:1525577‑M2/91‑12 (MQ=255)

              cTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtttt                                                                              >  1:228056‑M2/1‑77 (MQ=255)

               tttCGATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                             <  1:3457802/91‑1 (MQ=255)

               tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                             <  1:1726204/91‑1 (MQ=255)

               tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                             <  1:377631/91‑1 (MQ=255)

                ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                            <  1:2726682/91‑1 (MQ=255)

                ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                            <  1:1486450/91‑1 (MQ=255)

                ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                            <  1:2721837/91‑1 (MQ=255)

                ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                            <  1:2830502/91‑1 (MQ=255)

                 tCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgt                                                                           <  1:1808779/91‑1 (MQ=255)

                   aaTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgttt                                                                         <  1:3320275/91‑1 (MQ=255)

                     tttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgt                                                                       <  1:2767205/91‑1 (MQ=255)

                      ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                      <  1:628165/91‑1 (MQ=255)

                      ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                      <  1:3201433/91‑1 (MQ=255)

                      ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                      <  1:3513143/91‑1 (MQ=255)

                         aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTc                                                                   <  1:766895/91‑1 (MQ=255)

                         aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTc                                                                   >  1:335157/1‑91 (MQ=255)

                         aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTCGTTTTc                                                                   <  1:3226273/91‑1 (MQ=255)

                          cAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCa                                                                  >  1:2959510/1‑91 (MQ=255)

                              tAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCa                                                              <  1:2824437/91‑1 (MQ=255)

                              tAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCa                                                              <  1:1676880/91‑1 (MQ=255)

                               aaaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCAc                                                             <  1:1922330/91‑1 (MQ=255)

                                aaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACg                                                            <  1:608382/91‑1 (MQ=255)

                                 aTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACgg                                                           <  1:2771311/91‑1 (MQ=255)

                                  tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGa                                                          <  1:2626135/91‑1 (MQ=255)

                                   ttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAt                                                         <  1:3410646/91‑1 (MQ=255)

                                   ttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAt                                                         <  1:2276491/91‑1 (MQ=255)

                                    tATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAta                                                        <  1:1409391/91‑1 (MQ=255)

                                     aTTCTGCATAACAATACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTTGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                       <  1:3742773/91‑1 (MQ=255)

                                     aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGTAtac                                                       >  1:489927/1‑91 (MQ=255)

                                     aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                       <  1:1249285/91‑1 (MQ=255)

                                         tGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATactact                                                   >  1:2027442/1‑91 (MQ=255)

                                          gCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACtt                                                  <  1:2045077/91‑1 (MQ=255)

                                             tAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgat                                               <  1:3650379/91‑1 (MQ=255)

                                              aaCAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgatg                                              <  1:1853553/91‑1 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                          >  1:761035‑M1/1‑91 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                          <  1:400820‑M1/91‑1 (MQ=255)

                                                   AACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAg                                         >  1:2591485‑M1/1‑91 (MQ=255)

                                                    ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                        <  1:1459984‑M1/91‑1 (MQ=255)

                                                    ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                        <  1:3559130‑M1/91‑1 (MQ=255)

                                                    ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                        <  1:145630‑M1/91‑1 (MQ=255)

                                                    ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                        <  1:4109572‑M1/91‑1 (MQ=255)

                                                      tCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcgg                                      <  1:1179500‑M2/91‑55 (MQ=255)

                                                       CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                     <  1:3785495‑M1/91‑1 (MQ=255)

                                                       CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                     <  1:2242797‑M1/91‑1 (MQ=255)

                                                       CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                     <  1:7753‑M1/91‑1 (MQ=255)

                                                       CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                     <  1:211613‑M1/91‑1 (MQ=255)

                                                       CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                     <  1:383355‑M1/91‑1 (MQ=255)

                                                       CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                     <  1:3785470‑M1/91‑1 (MQ=255)

                                                         TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                   >  1:761704‑M1/1‑91 (MQ=255)

                                                         TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                   >  1:330914‑M1/1‑91 (MQ=255)

                                                          AATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattacta                                  <  1:2395342‑M1/91‑1 (MQ=255)

                                                           aTGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaa                                 <  1:3077771‑M2/91‑60 (MQ=255)

                                                           ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                 <  1:898183‑M1/91‑1 (MQ=255)

                                                           ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                 >  1:102590‑M1/1‑91 (MQ=255)

                                                            tGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaa                                <  1:35578‑M2/91‑61 (MQ=255)

                                                            TGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatt                                >  1:573737‑M1/1‑91 (MQ=255)

                                                            TGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatt                                >  1:573821‑M1/1‑91 (MQ=255)

                                                               aCTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaatcc                             <  1:2702679‑M2/91‑64 (MQ=255)

                                                               aCTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactattact                             >  1:198469/1‑91 (MQ=255)

                                                                cTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttactt                            <  1:1842232/91‑1 (MQ=255)

                                                                cTAGTTTAGAATTTTTTAACTAGT‑‑cattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaatccacta                           <  1:1944909‑M2/91‑67 (MQ=255)

                                                                 tAGTTTAGAATTTTTTAACTAGT‑‑cattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaatccactat                          <  1:2989455‑M2/91‑68 (MQ=255)

                                                                  aGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttacttac                          <  1:3896439/91‑1 (MQ=255)

                                                                  aGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttacttac                          <  1:1779372/91‑1 (MQ=255)

                                                                  aGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttacttac                          <  1:2246853/91‑1 (MQ=255)

                                                                   gTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACg                         >  1:354811/1‑91 (MQ=255)

                                                                    tttAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGc                        <  1:3400769/91‑1 (MQ=255)

                                                                     ttAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaatccactatt                       >  1:3659582‑M2/1‑22 (MQ=255)

                                                                       aGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCa                     <  1:796447/91‑1 (MQ=255)

                                                                       aGAATTTTTCAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCa                     <  1:227173/91‑1 (MQ=255)

                                                                        gAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaa                    <  1:655598/91‑1 (MQ=255)

                                                                         aaTTTTTTAACTGGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaaa                   >  1:3203715/1‑91 (MQ=255)

                                                                         aaTTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCGaaa                   >  1:3208401/1‑91 (MQ=255)

                                                                          aTTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAAt                  >  1:1476143/1‑91 (MQ=255)

                                                                           ttttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATg                 <  1:2342997/91‑1 (MQ=255)

                                                                             ttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCg               >  1:802145/1‑91 (MQ=255)

                                                                              tttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGt              <  1:3367724/91‑1 (MQ=255)

                                                                              tttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGt              <  1:3806492/91‑1 (MQ=255)

                                                                                  aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa          <  1:4059064/91‑1 (MQ=255)

                                                                                   cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt         >  1:148812/1‑91 (MQ=255)

                                                                                    tAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATa        >  1:740703/1‑91 (MQ=255)

                                                                                          cacaTTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATc  <  1:456440/91‑1 (MQ=255)

                                                                                          cacaTTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATc  <  1:456402/91‑1 (MQ=255)

                                                                                          cacaTTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATc  >  1:3889356/1‑91 (MQ=255)

GGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATC  >  USA300TCH1516_ALE/1759618‑1759798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.