BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2476453	77 (0.780)	9 (0.110)	6/136	NT	10.7%	intergenic (‑198/+42)	tcaA/tcaR	Membrane‑associated protein TcaA/HTH‑type transcriptional regulator TcaR
*	?	USA300TCH1516_ALE	= 2476476	85 (1.020)	9 (0.110)	6/136	NT	10.7%	intergenic (‑221/+19)	tcaA/tcaR	Membrane‑associated protein TcaA/HTH‑type transcriptional regulator TcaR

Only 100 of 127 total aligned reads displayed.

GAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATAT  >  USA300TCH1516_ALE/2476387‑2476565

gAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATt                                                                                          <  1:1793370‑M2/91‑2 (MQ=255)

gAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATt                                                                                          <  1:2452615‑M2/91‑2 (MQ=255)

  aTTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttg                                                                                        >  1:3674120‑M2/1‑88 (MQ=255)

  aTTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttg                                                                                        >  1:3674187‑M2/1‑88 (MQ=255)

  aTTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTATTATATttg                                                                                        <  1:3978490‑M2/91‑4 (MQ=255)

   ttGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttga                                                                                       >  1:418757‑M2/1‑87 (MQ=255)

   ttGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttga                                                                                       >  1:418493‑M2/1‑87 (MQ=255)

     gTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaac                                                                                     <  1:1120941‑M2/91‑7 (MQ=255)

       aCCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaacac                                                                                   >  1:315505‑M2/1‑83 (MQ=255)

        ccTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaacacc                                                                                  >  1:546942‑M2/1‑82 (MQ=255)

        ccTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaacacc                                                                                  >  1:511820‑M2/1‑82 (MQ=255)

        ccTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaacacc                                                                                  >  1:1779625‑M2/1‑82 (MQ=255)

        ccTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaacacc                                                                                  >  1:1147395‑M2/1‑82 (MQ=255)

         cTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaacacct                                                                                 <  1:2518488‑M2/91‑11 (MQ=255)

          ttattaCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATttgaacacctt                                                                                >  1:2991148‑M2/1‑80 (MQ=255)

             ttaCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCaa                                                                             <  1:2163158/91‑1 (MQ=255)

               aCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCaaaa                                                                           <  1:967454/91‑1 (MQ=255)

               aCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCaaaa                                                                           <  1:966518/91‑1 (MQ=255)

               aCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCaaaa                                                                           <  1:967316/91‑1 (MQ=255)

                cATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCaaaaa                                                                          <  1:481219/91‑1 (MQ=255)

                      ttatGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTAtt                                                                    <  1:3416558/91‑1 (MQ=255)

                       tatGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTAttt                                                                   <  1:793566/91‑1 (MQ=255)

                       tatGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTAttt                                                                   <  1:1993964/91‑1 (MQ=255)

                        atGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTa                                                                  <  1:2802120/91‑1 (MQ=255)

                         tGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTAt                                                                 <  1:270011/91‑1 (MQ=255)

                         tGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTAt                                                                 >  1:532979/1‑91 (MQ=255)

                          gAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACTTATTTTGTCTTATATTAGAACACTTTCAAAACCCTATTTATg                                                                >  1:523589/1‑91 (MQ=255)

                             aGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGAtt                                                             <  1:806568/91‑1 (MQ=255)

                               tACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGc                                                           <  1:354109/91‑1 (MQ=255)

                                aCTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCt                                                          <  1:1972838/91‑1 (MQ=255)

                                 ctctctCAATTATAACTAAAAAGAAGGTGTTCAATACAAACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCta                                                         >  1:3072043/1‑91 (MQ=255)

                                  tctctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCtat                                                        >  1:2140186/1‑91 (MQ=255)

                                  tctctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCtat                                                        >  1:2142248/1‑91 (MQ=255)

                                  tctctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCtat                                                        <  1:1287718/91‑1 (MQ=255)

                                  tctctcAATTACAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCCTATATTTGAACGCCTTCAAAAACCTATTTATGATTGCtat                                                        <  1:3768110/91‑1 (MQ=255)

                                    tctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTatat                                                      >  1:1295344/1‑91 (MQ=255)

                                     ctcAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATg                                                     >  1:3827066/1‑91 (MQ=255)

                                       cAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGtt                                                   <  1:842867/91‑1 (MQ=255)

                                           tataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTaa                                               >  1:3156038/1‑91 (MQ=255)

                                            ataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAt                                              <  1:2794720/91‑1 (MQ=255)

                                            ataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAt                                              >  1:3408520/1‑91 (MQ=255)

                                            ataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAAt                                              <  1:3339701/91‑1 (MQ=255)

                                              aaCTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGc                                            >  1:2479125/1‑91 (MQ=255)

                                               aCTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCg                                           <  1:3896566/91‑1 (MQ=255)

                                                cTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCga                                          >  1:1613439/1‑91 (MQ=255)

                                                   aaaaGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCgatga                                       >  1:1633182/1‑91 (MQ=255)

                                                   aaaaGAAGGAGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCgatga                                       <  1:3962681/91‑1 (MQ=255)

                                                    aaaGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCgatgat                                      >  1:100176/1‑91 (MQ=255)

                                                    aaaGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCgatgat                                      <  1:762538/91‑1 (MQ=255)

                                                     aagaagGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgatt                                     <  1:3443149/91‑1 (MQ=255)

                                                     aagaagGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgatt                                     <  1:3441858/91‑1 (MQ=255)

                                                     aagaagGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgatt                                     >  1:4083538/1‑91 (MQ=255)

                                                       gaagGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgattga                                   >  1:2438867/1‑91 (MQ=255)

                                                       gaagGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgattga                                   >  1:3136339/1‑91 (MQ=255)

                                                       gaagGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgattga                                   >  1:4119603/1‑91 (MQ=255)

                                                          ggTGTTCAATACATACATTTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATtgatga                                >  1:375336/1‑91 (MQ=255)

                                                          ggTGTTCAATACATACATATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataagg                                <  1:3610976‑M2/91‑60 (MQ=255)

                                                          ggTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATtgatga                                >  1:1783315/1‑91 (MQ=255)

                                                          ggTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATtgatga                                >  1:194957/1‑91 (MQ=255)

                                                          ggTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATtgatga                                >  1:856014/1‑91 (MQ=255)

                                                          ggTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATtgatga                                >  1:1783194/1‑91 (MQ=255)

                                                           gtgtTCAATACATACATATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaggt                               <  1:675169‑M2/91‑61 (MQ=255)

                                                           gtgtTCAATACATACATATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaggt                               <  1:3914999‑M2/91‑61 (MQ=255)

                                                           gtgtTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGAc                               <  1:417430/91‑1 (MQ=255)

                                                            tgtTCAATACATACATATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaggta                              <  1:3103412‑M2/91‑62 (MQ=255)

                                                            tgtTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACt                              >  1:1689661/1‑91 (MQ=255)

                                                              ttCAATACATACATATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaggtaca                            <  1:2401670‑M2/91‑64 (MQ=255)

                                                               tCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCt                           <  1:1334487/91‑1 (MQ=255)

                                                               tCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCt                           <  1:2933051/91‑1 (MQ=255)

                                                               tCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCt                           <  1:2933087/91‑1 (MQ=255)

                                                               tCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCt                           <  1:2739427/91‑1 (MQ=255)

                                                                 aaTACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTaa                         >  1:1514834/1‑91 (MQ=255)

                                                                 aaTACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTaa                         >  1:1957426/1‑91 (MQ=255)

                                                                  atacatacATATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaggtacaattc                        <  1:1905754‑M2/91‑68 (MQ=255)

                                                                   tacatacaTATTTAGTCTTATATttgaacaccttctttttagttataattgagagagtactttcataaataatgtaataaggtacaattct                       <  1:561372‑M2/91‑69 (MQ=255)

                                                                     catacataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACt                     <  1:2562943/91‑1 (MQ=255)

                                                                     catacataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACt                     <  1:507825/91‑1 (MQ=255)

                                                                     catacataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACt                     <  1:507516/91‑1 (MQ=255)

                                                                      atacataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACtt                    >  1:278731/1‑91 (MQ=255)

                                                                      atacataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACtt                    >  1:278034/1‑91 (MQ=255)

                                                                      atacataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACtt                    <  1:1170739/91‑1 (MQ=255)

                                                                       tacataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTg                   >  1:2275895/1‑91 (MQ=255)

                                                                        acataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGc                  <  1:955514/91‑1 (MQ=255)

                                                                        acataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGc                  <  1:955713/91‑1 (MQ=255)

                                                                        acataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGc                  <  1:27572/91‑1 (MQ=255)

                                                                         cataTTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGcc                 <  1:3438038/91‑1 (MQ=255)

                                                                          atatTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCt                >  1:3084284/1‑91 (MQ=255)

                                                                           tatTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCtt               <  1:1427879/91‑1 (MQ=255)

                                                                            atTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTa              <  1:2018677/91‑1 (MQ=255)

                                                                               tAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAt           >  1:1308979/1‑91 (MQ=255)

                                                                               tAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAt           <  1:1453092/91‑1 (MQ=255)

                                                                               tAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAt           <  1:1339641/91‑1 (MQ=255)

                                                                                aGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAtt          >  1:2926588/1‑91 (MQ=255)

                                                                                   cTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTc       <  1:2850043/91‑1 (MQ=255)

                                                                                   cTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTc       <  1:3272701/91‑1 (MQ=255)

                                                                                    ttATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCa      <  1:3371295/91‑1 (MQ=255)

                                                                                    ttATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCa      <  1:3371283/91‑1 (MQ=255)

                                                                                      atatTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAat    >  1:2736276/1‑91 (MQ=255)

                                                                                      atatTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAat    >  1:1955578/1‑91 (MQ=255)

                                                                                        atTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAatat  >  1:1944272/1‑91 (MQ=255)

GAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTGAACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATAT  >  USA300TCH1516_ALE/2476387‑2476565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.