BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	20439 =	327 (0.930)	32 (0.100)	14/148	NT	10.1%	coding (632/675 nt)	USA300HOU_pUSA300HOUMR0027	IS431mec transposase
*	?	CP000731	20463 =	269 (0.830)	32 (0.100)	14/148	NT	10.1%	coding (608/675 nt)	USA300HOU_pUSA300HOUMR0027	IS431mec transposase

Only 100 of 404 total aligned reads displayed.

TAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAA  >  CP000731/20373‑20553

tAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGt                                                                                            <  1:1828018/91‑1 (MQ=39)

 aaTATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGtt                                                                                           >  1:2348174/1‑91 (MQ=38)

   tatcaatacggcaaagaatactttaaaaggtattgaatgtatttacgctctatataaaaagaaCCGTAGATCTGAAGAGACCTACGGTTCt                                                                                         >  1:2513875‑M1/64‑91 (MQ=255)

     tatCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCttt                                                                                       <  1:745126/91‑1 (MQ=39)

       tCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCttttt                                                                                     <  1:4087615/91‑1 (MQ=39)

        cATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTta                                                                                    >  1:250460/1‑91 (MQ=37)

         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   <  1:986485/91‑1 (MQ=39)

         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   <  1:3265882/91‑1 (MQ=39)

         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   >  1:3357964/1‑91 (MQ=38)

         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   <  1:3890332/91‑1 (MQ=39)

          tGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtata                                                                                  <  1:261619/91‑1 (MQ=39)

           gTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtatat                                                                                 <  1:524631/91‑1 (MQ=39)

             cAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATag                                                                               <  1:2178390/91‑1 (MQ=39)

              aGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATaga                                                                              <  1:836495/91‑1 (MQ=39)

               gtgtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATagag                                                                             <  1:2128827/91‑1 (MQ=38)

               gtgtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCACGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATagag                                                                             >  1:3590246/1‑91 (MQ=255)

                  ttCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGGGCGt                                                                          <  1:3278548/91‑1 (MQ=255)

                  ttCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGt                                                                          <  1:2965311/91‑1 (MQ=39)

                   tCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCAGGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTa                                                                         <  1:937468/91‑1 (MQ=37)

                     gTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTaaa                                                                       >  1:2919992/1‑91 (MQ=39)

                       ttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATa                                                                     >  1:3221956/1‑91 (MQ=39)

                        tAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATAc                                                                    <  1:778413/91‑1 (MQ=39)

                         aaCTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACa                                                                   >  1:2721008/1‑91 (MQ=39)

                           cTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACAtt                                                                 >  1:2751795/1‑91 (MQ=39)

                            ttGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTc                                                                <  1:1933844/91‑1 (MQ=39)

                              gCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCaa                                                              >  1:3959556/1‑91 (MQ=39)

                               cTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAAt                                                             >  1:542915/1‑91 (MQ=39)

                               cTAGCATGATGCTAATCTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAAt                                                             >  1:1590469/1‑91 (MQ=37)

                                tAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATa                                                            <  1:3479479/91‑1 (MQ=39)

                                tAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATa                                                            <  1:3002667/91‑1 (MQ=39)

                                tAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTCATATAGAGCGTAAATACATTCAATa                                                            >  1:3865277/1‑91 (MQ=255)

                                 aGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATAc                                                           <  1:1150971/91‑1 (MQ=39)

                                  attgaatgtatttacgctctatataaaaagaaCCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATAcc                                                          <  1:2433776‑M1/59‑1 (MQ=255)

                                   cATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCt                                                         <  1:2013263/91‑1 (MQ=39)

                                         gCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTaaa                                                   >  1:3029632/1‑91 (MQ=39)

                                         gCTAATTTCGGGGCATGGGGAAAATCCGTAGATCGGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTaaa                                                   <  1:414779/91‑1 (MQ=255)

                                          cTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAg                                                  >  1:3703438/1‑91 (MQ=39)

                                           tAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGt                                                 >  1:1187545/1‑91 (MQ=39)

                                           tAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGt                                                 <  1:3736679/91‑1 (MQ=39)

                                            aaTTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTa                                                >  1:1231861/1‑91 (MQ=38)

                                            aaTTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTa                                                >  1:1037808/1‑91 (MQ=39)

                                            aaTTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTa                                                <  1:1997488/91‑1 (MQ=39)

                                              tttCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTAtt                                              <  1:1396176/91‑1 (MQ=39)

                                              tttCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTAtt                                              <  1:579735/91‑1 (MQ=38)

                                               ttCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTc                                             <  1:3649909/91‑1 (MQ=39)

                                                tCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCt                                            >  1:1329007/1‑91 (MQ=39)

                                                tCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCt                                            <  1:2042734/91‑1 (MQ=39)

                                                tCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCt                                            <  1:1822537/91‑1 (MQ=39)

                                                   tGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTg                                         >  1:1520325/1‑91 (MQ=39)

                                                    ctatataaaaagaaCCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGc                                        <  1:738899‑M1/77‑1 (MQ=255)

                                                       aTGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAACGTATTCTTTGCCGt                                     >  1:1204475/1‑91 (MQ=255)

                                                        tGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTa                                    <  1:47949/91‑1 (MQ=40)

                                                        tGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTa                                    <  1:1752458/91‑1 (MQ=255)

                                                         ggggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTAt                                   >  1:88158/1‑91 (MQ=255)

                                                         ggggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTAt                                   <  1:2251534/91‑1 (MQ=255)

                                                         ggggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTAt                                   >  1:900546/1‑91 (MQ=255)

                                                         ggggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTAt                                   <  1:1960548/91‑1 (MQ=255)

                                                          gggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTAtt                                  <  1:1712213/91‑1 (MQ=255)

                                                           aaaagaaCCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTg                                 <  1:2433176‑M1/84‑1 (MQ=255)

                                                             aaaaTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGAt                               >  1:1450839/1‑91 (MQ=39)

                                                              aaaTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATa                              >  1:1659725/1‑91 (MQ=39)

                                                                aTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACt                            <  1:2836738/91‑1 (MQ=39)

                                                                 tCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACtt                           >  1:2939983/1‑91 (MQ=39)

                                                                  ccgtaggtctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACttt                          >  1:2088718‑M2/25‑91 (MQ=255)

                                                                   cgtaggtctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTg                         >  1:1019302‑M2/24‑91 (MQ=255)

                                                                    GTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGa                        >  1:692653‑M1/1‑91 (MQ=255)

                                                                     TAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGat                       <  1:3971064‑M1/91‑1 (MQ=255)

                                                                     TAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGat                       <  1:1026628‑M1/91‑1 (MQ=255)

                                                                     TAGATCTGAAGAGACCTACGGGTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGat                       <  1:350823‑M1/91‑1 (MQ=255)

                                                                       ggtctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGCTCCTTTGatat                     >  1:1079752‑M2/20‑91 (MQ=255)

                                                                       GATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGatat                     >  1:3149719‑M1/1‑91 (MQ=255)

                                                                       GATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGatat                     >  1:2469076‑M1/1‑91 (MQ=255)

                                                                        aTCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATc                    <  1:627323/91‑1 (MQ=40)

                                                                         tCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCt                   >  1:3541665/1‑91 (MQ=255)

                                                                         tCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCt                   >  1:2316860/1‑91 (MQ=255)

                                                                         tCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCt                   <  1:2281550/91‑1 (MQ=255)

                                                                           tcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                 >  1:3402805‑M2/16‑91 (MQ=255)

                                                                           tcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                 >  1:1076708‑M2/16‑91 (MQ=255)

                                                                           tGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                 <  1:3845224/91‑1 (MQ=255)

                                                                           tGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                 <  1:652939/91‑1 (MQ=255)

                                                                            gAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGt                >  1:2058629/1‑91 (MQ=255)

                                                                            gAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGt                >  1:3818915/1‑91 (MQ=255)

                                                                             aaGAGACCTATGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtc               >  1:32288/1‑91 (MQ=255)

                                                                             aaGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtc               >  1:1603388/1‑91 (MQ=255)

                                                                             aaGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtc               >  1:3380146/1‑91 (MQ=255)

                                                                               gagaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctt             <  1:3069208/91‑1 (MQ=255)

                                                                               gagaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctt             >  1:1473521/1‑91 (MQ=255)

                                                                               gagaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctt             <  1:3597357/91‑1 (MQ=255)

                                                                               gagaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctt             <  1:3598946/91‑1 (MQ=255)

                                                                                agaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtcttt            <  1:1254717/91‑1 (MQ=255)

                                                                                 gatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctttc           >  1:1127396‑M2/10‑91 (MQ=255)

                                                                                 gaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctttc           >  1:1779305/1‑91 (MQ=255)

                                                                                 gaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctttc           <  1:3572588/91‑1 (MQ=255)

                                                                                 gaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctttc           >  1:511623/1‑91 (MQ=255)

                                                                                 gaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctttc           >  1:2579309/1‑91 (MQ=255)

                                                                                     tacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAc       >  1:2526331‑M2/6‑91 (MQ=255)

                                                                                     tacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAc       <  1:1356567‑M2/86‑1 (MQ=255)

                                                                                     tacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAc       >  1:3314826‑M2/6‑91 (MQ=255)

                                                                                       cggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACtt     <  1:237520‑M2/88‑1 (MQ=255)

                                                                                        ggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACttt    <  1:60704‑M2/89‑1 (MQ=255)

TAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAA  >  CP000731/20373‑20553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.