BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 500	5203 (0.520)	262 (0.030)	24/148	NT	5.1%	pseudogene (221/709 nt)	USA300HOU_RS14890	replication protein
*	?	NC_012417	= 511	4987 (0.540)	262 (0.030)	24/148	NT	5.1%	pseudogene (232/709 nt)	USA300HOU_RS14890	replication protein

Only 100 of 10100 total aligned reads displayed.

AAAGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAGAAGAAT  >  NC_012417/421‑601

aaagCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATg                                                                                            >  1:3907098‑M2/5‑91 (MQ=255)

  aGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGac                                                                                          >  1:122868‑M2/1‑89 (MQ=255)

   gCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacg                                                                                         >  1:840323‑M2/1‑88 (MQ=255)

   gCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacg                                                                                         <  1:1517914‑M2/91‑4 (MQ=255)

    cATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacgg                                                                                        >  1:1000904‑M2/1‑87 (MQ=255)

     aTTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggt                                                                                       <  1:4092221‑M2/91‑6 (MQ=255)

     aTTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggt                                                                                       <  1:3234373‑M2/91‑6 (MQ=255)

     aTTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggt                                                                                       <  1:2557731‑M2/91‑6 (MQ=255)

     aTTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggt                                                                                       <  1:1354373‑M2/91‑6 (MQ=255)

      tttGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGacggta                                                                                      <  1:1987937‑M2/91‑7 (MQ=255)

       ttGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAg                                                                                     >  1:3485577/1‑91 (MQ=255)

        tGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGt                                                                                    >  1:3268257/1‑91 (MQ=255)

        tGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGt                                                                                    >  1:91389/1‑91 (MQ=255)

         gATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGtt                                                                                   <  1:3054356/91‑1 (MQ=255)

         gATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGtt                                                                                   <  1:4013018/91‑1 (MQ=255)

          aTAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTta                                                                                  <  1:1646191/91‑1 (MQ=255)

          aTAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTta                                                                                  >  1:2301068/1‑91 (MQ=255)

           tAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTtat                                                                                 >  1:1394904/1‑91 (MQ=255)

           tAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTtat                                                                                 >  1:3644749/1‑91 (MQ=255)

            aGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTtata                                                                                >  1:2829399/1‑91 (MQ=255)

             ggTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATaa                                                                               <  1:631880/91‑1 (MQ=255)

             ggTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATaa                                                                               <  1:3164109/91‑1 (MQ=255)

               ttGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATC                                                                             >  1:2632495‑M1/1‑91 (MQ=255)

               ttGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATC                                                                             <  1:2411336‑M1/91‑1 (MQ=255)

               ttGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATC                                                                             <  1:3939565‑M1/91‑1 (MQ=255)

               ttGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATC                                                                             <  1:3827189‑M1/91‑1 (MQ=255)

                 gAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAg                                                                           >  1:466968/1‑91 (MQ=255)

                 gAGCAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAg                                                                           <  1:3345053/91‑1 (MQ=255)

                  aGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGc                                                                          >  1:1481883/1‑91 (MQ=255)

                   gTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGca                                                                         >  1:1862524/1‑91 (MQ=255)

                   gTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGca                                                                         >  1:4049798/1‑91 (MQ=255)

                   gTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGca                                                                         >  1:1264527/1‑91 (MQ=255)

                   gTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGca                                                                         >  1:2750035/1‑91 (MQ=255)

                     aGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACA                                                                       <  1:1439319‑M1/91‑1 (MQ=255)

                        tataAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGC                                                                    >  1:805273‑M1/1‑91 (MQ=255)

                           aaaaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCAcatgcatg                                                                 <  1:2485316/91‑1 (MQ=255)

                            aaaaGGTTAAACCAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGt                                                                >  1:3199804/1‑91 (MQ=255)

                            aaaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGt                                                                >  1:77503/1‑91 (MQ=255)

                            aaaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGt                                                                >  1:3530435/1‑91 (MQ=255)

                             aaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGtt                                                               >  1:3014140/1‑91 (MQ=255)

                             aaaGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGtt                                                               <  1:2524300/91‑1 (MQ=255)

                                ggTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTg                                                            >  1:958482/1‑91 (MQ=255)

                                 gTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGt                                                           <  1:2678067/91‑1 (MQ=255)

                                  ttAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGtt                                                          <  1:737629/91‑1 (MQ=255)

                                    aaaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAt                                                        >  1:216102/1‑91 (MQ=255)

                                    aaaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAt                                                        >  1:2940022/1‑91 (MQ=255)

                                    aaaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGCTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAt                                                        >  1:1793531/1‑91 (MQ=255)

                                     aaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtg                                                       >  1:3722090/1‑91 (MQ=255)

                                     aaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtg                                                       >  1:3379346/1‑91 (MQ=255)

                                     aaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtg                                                       >  1:1683289/1‑91 (MQ=255)

                                     aaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtg                                                       <  1:279424/91‑1 (MQ=255)

                                     aaCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtg                                                       <  1:2232957/91‑1 (MQ=255)

                                      aCAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTCTTGTTAtgt                                                      >  1:3977333/1‑91 (MQ=255)

                                       cAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtgtg                                                     <  1:2976549/91‑1 (MQ=255)

                                       cAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTAtgtg                                                     <  1:505435/91‑1 (MQ=255)

                                         aaaTCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTt                                                   >  1:3446776‑M2/1‑90 (MQ=255)

                                           aTCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTtga                                                 <  1:2593866‑M2/91‑4 (MQ=255)

                                              ttgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAa                                              >  1:424175‑M2/1‑90 (MQ=255)

                                              ttgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAa                                              <  1:28627‑M2/91‑2 (MQ=255)

                                               tgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAat                                             >  1:3792906‑M2/1‑89 (MQ=255)

                                               tgttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAat                                             <  1:2267343‑M2/91‑3 (MQ=255)

                                                gttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAatg                                            <  1:202494‑M2/91‑4 (MQ=255)

                                                gttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAatg                                            >  1:2339354‑M2/1‑88 (MQ=255)

                                                 ttgGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAatgc                                           <  1:4130176‑M2/91‑5 (MQ=255)

                                                     aTTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCatat                                       >  1:2903589/1‑91 (MQ=255)

                                                       ttATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATAttt                                     <  1:1828913/91‑1 (MQ=255)

                                                        tATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATAtttt                                    <  1:1075205/91‑1 (MQ=255)

                                                          tGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAg                                  >  1:3417648/1‑91 (MQ=255)

                                                            cGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaa                                <  1:1942236/91‑1 (MQ=255)

                                                             gTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaaa                               >  1:2095193/1‑91 (MQ=255)

                                                               tCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaaaaa                             >  1:3607123/1‑91 (MQ=255)

                                                               tCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaaaaa                             <  1:1751362/91‑1 (MQ=255)

                                                                cAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGaaaaaa                            <  1:588612/91‑1 (MQ=255)

                                                                  aCAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAag                          >  1:2123463/1‑91 (MQ=255)

                                                                  aCAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAag                          >  1:1314174/1‑91 (MQ=255)

                                                                   cAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAaga                         <  1:3567173/91‑1 (MQ=255)

                                                                    aGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAagag                        >  1:1546353/1‑91 (MQ=255)

                                                                    aGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAagag                        >  1:1159361/1‑91 (MQ=255)

                                                                     gAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAgaga                       >  1:2065553/1‑91 (MQ=255)

                                                                       aGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAAt                     >  1:876934/1‑91 (MQ=255)

                                                                          TACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATtat                  <  1:3689435‑M1/91‑1 (MQ=255)

                                                                            ccGTTAATAAAAATGacggtaacttctgttgaacgcataaatccaacaagattttgtttaacctttttatatctactcaacctatcaaatg                <  1:2190515‑M2/91‑77 (MQ=255)

                                                                            CCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATtatat                <  1:171883‑M1/91‑1 (MQ=255)

                                                                              GTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATaa              <  1:2446900‑M1/91‑1 (MQ=255)

                                                                               ttAATAAAAATGacggtaacttctgttgaacgcataaatccaacaagattttgtttaacctttttatatctactcaaccgatcaaatgctt             <  1:3757973‑M2/91‑80 (MQ=255)

                                                                               TTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAAc             <  1:70687‑M1/91‑1 (MQ=255)

                                                                                 aataaAAATGACGGTAGTTATAATCCGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTc           <  1:3868337/91‑1 (MQ=255)

                                                                                 aataaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTc           <  1:31295/91‑1 (MQ=255)

                                                                                  ataaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCa          <  1:18998/91‑1 (MQ=255)

                                                                                  ataaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCa          <  1:666814/91‑1 (MQ=255)

                                                                                   taaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaa         <  1:3088762/91‑1 (MQ=255)

                                                                                   taaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaa         <  1:1613355/91‑1 (MQ=255)

                                                                                   taaAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaa         <  1:3305283/91‑1 (MQ=255)

                                                                                    aaaaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaag        <  1:1044114/91‑1 (MQ=255)

                                                                                     aaaaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaaga       >  1:1577796/1‑91 (MQ=255)

                                                                                       aaTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCaagaag     >  1:1191175/1‑91 (MQ=255)

                                                                                        aTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAagaaga    >  1:547077/1‑91 (MQ=255)

                                                                                        aTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAagaaga    >  1:2374610/1‑91 (MQ=255)

                                                                                        aTGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAagaaga    >  1:1116663/1‑91 (MQ=255)

                                                                                         tGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAgaagaa   <  1:2712126/91‑1 (MQ=255)

AAAGCATTTGATAGGTTGAGTAGATATAAAAAGGTTAAACAAAATCTTGTTGGATTTATGCGTTCAACAGAAGTTACCGTTAATAAAAATGACGGTAGTTATAATCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAGAAGAAT  >  NC_012417/421‑601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.