BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	987 =	3888 (0.390)	794 (0.090)	29/138	NT	20.3%	pseudogene (708/709 nt)	USA300HOU_RS14890	replication protein
*	?	NC_012417	1013 =	2877 (0.330)	794 (0.090)	29/138	NT	20.3%	coding (182/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 11330 total aligned reads displayed.

ACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTG  >  NC_012417/923‑1103

aCGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCttt                                                                                            >  1:1206305/1‑91 (MQ=255)

 cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttt                                                                                           >  1:880957/1‑91 (MQ=255)

   aagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttttt                                                                                         >  1:3193997/1‑91 (MQ=255)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        >  1:2781727/1‑91 (MQ=255)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        <  1:3869459/91‑1 (MQ=255)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        <  1:2391584/91‑1 (MQ=255)

     ctacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtgttgactaatgtcttTTttgt                                                                                       <  1:3272461‑M2/6‑1 (MQ=255)

       agaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgttg                                                                                     >  1:540510/1‑91 (MQ=255)

         aaaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAt                                                                                   >  1:438067/1‑91 (MQ=255)

             aGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATGATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttttt                                                                               >  1:353619/1‑91 (MQ=255)

               cacaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTta                                                                             >  1:1996311/1‑91 (MQ=255)

                acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtat                                                                            <  1:2243561/91‑1 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  1:1889320/1‑91 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  1:2176580/1‑91 (MQ=255)

                  aTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaa                                                                          <  1:1069056/91‑1 (MQ=255)

                  aTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaa                                                                          <  1:3385812/91‑1 (MQ=255)

                      aattaccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaaaaaa                                                                      <  1:3980821‑M2/84‑1 (MQ=255)

                       aTTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAG                                                                     <  1:709364‑M1/91‑1 (MQ=255)

                        ttACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGT                                                                    <  1:1599629‑M1/91‑1 (MQ=255)

                         tACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTA                                                                   <  1:4135322‑M1/91‑1 (MQ=255)

                           ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACT                                                                 >  1:3571710‑M1/1‑91 (MQ=255)

                             gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAGGTACTGT                                                               >  1:2069490‑M1/1‑91 (MQ=255)

                             gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                                               >  1:1739612‑M1/1‑91 (MQ=255)

                             gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                                               <  1:1852388‑M1/91‑1 (MQ=255)

                             gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                                               <  1:2938610‑M1/91‑1 (MQ=255)

                             gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGT                                                               >  1:810170‑M1/1‑91 (MQ=255)

                             ataagacagtacttttttataaaaaatcaacaaaaaagacattagtgttggctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGt                                                               <  1:103506‑M2/30‑1 (MQ=255)

                             ataagacagtacttttttataaaaaatcaacaaaaaagacattagtgttgactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGt                                                               <  1:1365953‑M2/30‑1 (MQ=255)

                              cAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTC                                                              <  1:1442017‑M1/91‑1 (MQ=255)

                              cAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTC                                                              <  1:916915‑M1/91‑1 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCT                                                             <  1:4020319‑M1/91‑1 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTGTTATAAAAAAGTACTGTCT                                                             <  1:1397590‑M1/91‑1 (MQ=255)

                                aTTTGGAATTTCGAAACGCAAAAATATTATTTAGGACATTAGTGTTGACTAATGTCTTTATTGTTGATTTTTTATAAAAAAGTACTGTCTT                                                            >  1:3308331‑M1/1‑91 (MQ=255)

                                 tttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTA                                                           <  1:2033984‑M1/91‑1 (MQ=255)

                                  ttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                          >  1:152568‑M1/1‑91 (MQ=255)

                                  ttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                          <  1:625477‑M1/91‑1 (MQ=255)

                                    ggAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTT                                                        >  1:3827944‑M1/1‑91 (MQ=255)

                                    ggAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTT                                                        <  1:3907745‑M1/91‑1 (MQ=255)

                                    ggAATTTAGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACGAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTT                                                        <  1:166485‑M1/91‑1 (MQ=255)

                                      aaTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTT                                                      >  1:1000377‑M1/1‑91 (MQ=255)

                                       aTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTG                                                     <  1:582624‑M1/91‑1 (MQ=255)

                                       aTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTG                                                     <  1:286260‑M1/91‑1 (MQ=255)

                                       aTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTG                                                     >  1:2670621‑M1/1‑91 (MQ=255)

                                        tttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                                                    <  1:1103490‑M1/91‑1 (MQ=255)

                                           cGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                 <  1:3648800‑M1/91‑1 (MQ=255)

                                           cGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                 >  1:2311857‑M1/1‑91 (MQ=255)

                                           cGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                 <  1:469706‑M1/91‑1 (MQ=255)

                                           cGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                 <  1:2514087‑M1/91‑1 (MQ=255)

                                           cGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                 <  1:775750‑M1/91‑1 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              >  1:3013740/1‑91 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              <  1:3421804/91‑1 (MQ=255)

                                                aGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATg                                            <  1:1958228/91‑1 (MQ=255)

                                                 gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                                           >  1:1287664/1‑91 (MQ=255)

                                                 gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                                           <  1:2346952/91‑1 (MQ=255)

                                                   aaaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg                                         >  1:4060799/1‑91 (MQ=255)

                                                   aaaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg                                         <  1:3117374/91‑1 (MQ=255)

                                                    aaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatac                                        <  1:1700761‑M1/91‑9 (MQ=255)

                                                      attATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtat                                      >  1:34595‑M2/4‑91 (MQ=255)

                                                        tATTATTTACGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatgt                                    <  1:3729405‑M2/90‑1 (MQ=255)

                                                          ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatt                                  <  1:2555464‑M1/91‑15 (MQ=255)

                                                           tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGt                                 <  1:3691987‑M2/91‑2 (MQ=255)

                                                             tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                               >  1:846288‑M2/1‑88 (MQ=255)

                                                              ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACGGTCTTAGTTTTGTGACAAATGCTGTATGTAGtgtc                              >  1:500254‑M2/1‑87 (MQ=255)

                                                              ttAAGACATTAGTGTTGACTAATGTCTTTTTGGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc                              >  1:1132444‑M2/1‑87 (MQ=255)

                                                               tAATACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                             >  1:3348402‑M2/1‑86 (MQ=255)

                                                               tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtca                             <  1:3078520‑M1/91‑20 (MQ=255)

                                                               tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                             >  1:3947827‑M2/1‑86 (MQ=255)

                                                                aaGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtcac                            <  1:3794280‑M1/91‑21 (MQ=255)

                                                                 aGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcaca                           >  1:2592456‑M2/1‑84 (MQ=255)

                                                                   acattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaa                         >  1:2273786‑M2/24‑91 (MQ=255)

                                                                   aCATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaa                         >  1:4089868‑M2/1‑82 (MQ=255)

                                                                    cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                        >  1:739121‑M2/23‑91 (MQ=255)

                                                                    cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                        >  1:2107457‑M2/23‑91 (MQ=255)

                                                                     aTTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaa                       <  1:3609649‑M2/91‑12 (MQ=255)

                                                                     aTTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaa                       >  1:1813300‑M2/1‑80 (MQ=255)

                                                                      ttagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                      >  1:667515‑M2/21‑91 (MQ=255)

                                                                      ttagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                      >  1:1323761‑M2/21‑91 (MQ=255)

                                                                      ttagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                      >  1:2749907‑M2/21‑91 (MQ=255)

                                                                       tAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaata                     >  1:2904020‑M2/1‑78 (MQ=255)

                                                                        agtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                    >  1:2210877‑M2/19‑91 (MQ=255)

                                                                        aGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataa                    <  1:1781282‑M2/91‑15 (MQ=255)

                                                                         gtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                   >  1:2712679‑M2/18‑91 (MQ=255)

                                                                          tgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataaga                  <  1:304826‑M2/91‑17 (MQ=255)

                                                                          tgtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataaga                  >  1:1170155‑M2/1‑75 (MQ=255)

                                                                          gtcaacactaatgtctTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGa                  >  1:1480679‑M2/17‑91 (MQ=255)

                                                                           gtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                 <  1:2475624‑M2/91‑18 (MQ=255)

                                                                           gtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                 >  1:2140816‑M2/1‑74 (MQ=255)

                                                                            aacactaATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagaca                <  1:1927291‑M2/88‑19 (MQ=255)

                                                                             tGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa               <  1:2633617/91‑1 (MQ=255)

                                                                             tGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa               >  1:2818323/1‑91 (MQ=255)

                                                                              gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTTACActacatacagcatttgtcacaaaaataagacagt              <  1:3494630‑M1/91‑35 (MQ=255)

                                                                              gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa              >  1:3158792/1‑91 (MQ=255)

                                                                                ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAACTAAGACAAACg            >  1:3766690‑M2/11‑91 (MQ=255)

                                                                                ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg            <  1:956238‑M2/81‑1 (MQ=255)

                                                                                   atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa         >  1:1565050‑M2/8‑91 (MQ=255)

                                                                                    tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat        >  1:1631823‑M2/7‑91 (MQ=255)

                                                                                     gtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAATGCAata       <  1:3231070‑M2/86‑1 (MQ=255)

                                                                                      tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat      <  1:1244335‑M2/87‑1 (MQ=255)

                                                                                      tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat      <  1:2977402‑M2/87‑1 (MQ=255)

                                                                                       cttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatata     <  1:2429353‑M2/88‑1 (MQ=255)

ACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTG  >  NC_012417/923‑1103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.