| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | = 3069 | 2218 (0.220) | 315 (0.030) | 24/146 | NT | 23.7% | intergenic (‑395/–) | USA300HOU_RS14900/– | hypothetical protein/– |
| ? | NC_012417 | = 3118 | 0 (0.000) | intergenic (‑444/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
Only 100 of 10801 total aligned reads displayed.
AAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012417/3028‑3125 | aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc > 1:2987456/1‑91 (MQ=255)aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc > 1:1999822/1‑91 (MQ=255)aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc > 1:387509/1‑91 (MQ=255) aCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtt < 1:1036073‑M2/91‑3 (MQ=255) cGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttt > 1:1194540‑M2/1‑88 (MQ=255) gtgtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt > 1:2793490‑M2/1‑87 (MQ=255) gtgtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt < 1:3247127‑M2/91‑5 (MQ=255) cggttatacttctagtagtattatattgcatATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt < 1:360737‑M2/60‑1 (MQ=255) gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttta > 1:2502579‑M2/1‑85 (MQ=255) gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttatta < 1:3213619‑M2/91‑7 (MQ=255) tttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttttat > 1:4109105‑M2/1‑84 (MQ=255) ttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATa < 1:3493219‑M2/91‑2 (MQ=255) ttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATa < 1:3947924‑M2/91‑2 (MQ=255) tttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTATTTATat < 1:2069168‑M2/91‑3 (MQ=255) ttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatg > 1:3391366‑M2/1‑88 (MQ=255) tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc < 1:4033635‑M2/91‑5 (MQ=255) tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc < 1:398427‑M2/91‑5 (MQ=255) tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc > 1:1076920‑M2/1‑87 (MQ=255) tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc > 1:4067609‑M2/1‑87 (MQ=255) tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc > 1:2343347‑M2/1‑87 (MQ=255) tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc > 1:214379‑M2/1‑87 (MQ=255) gtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgca > 1:1562878‑M2/1‑86 (MQ=255) gtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgca < 1:2946551‑M2/91‑6 (MQ=255) tgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaa > 1:31373‑M2/1‑85 (MQ=255) tgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaa > 1:781083‑M2/1‑85 (MQ=255) tgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaa < 1:3418813‑M2/91‑7 (MQ=255) gCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat < 1:3099002‑M2/91‑8 (MQ=255) gCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat > 1:3687042‑M2/1‑84 (MQ=255) cGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata > 1:1296134‑M2/1‑83 (MQ=255) cGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata > 1:2267025‑M2/1‑83 (MQ=255) tGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAAAAATACTGGGGATCTTTTTATatgcaatata > 1:195929‑M2/1‑81 (MQ=255) aaGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataata > 1:1449827‑M2/1‑78 (MQ=255) aaaaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactac < 1:1640226‑M2/91‑18 (MQ=255) aaaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatacttct > 1:2035669‑M2/1‑73 (MQ=255) tttGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactaga > 1:2909711‑M2/1‑70 (MQ=255) tGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatacttctagtag > 1:3023008‑M2/1‑68 (MQ=255) gACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt > 1:3059243‑M2/1‑67 (MQ=255) gACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt > 1:3357046‑M2/1‑67 (MQ=255) gACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt > 1:1897038‑M2/1‑67 (MQ=255) gACAATAAAAAACCCCAGTTATATTATTAAGGTGGCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt < 1:1262794‑M2/91‑25 (MQ=255) cAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatacttctagtagtat > 1:1371625‑M2/1‑65 (MQ=255) aaTAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtata < 1:2687807‑M2/91‑28 (MQ=255) aTAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataa < 1:1120097‑M2/91‑29 (MQ=255) aTAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagcataa < 1:3460319‑M2/91‑29 (MQ=255) aaaaaaCCCCAGTTATATTATTAAGGTGTTGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataacc > 1:2307444‑M2/1‑61 (MQ=255) aaaaaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataacc > 1:2831807‑M2/1‑61 (MQ=255) aaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaa < 1:3649066‑M2/91‑34 (MQ=255) aCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaa > 1:921676‑M2/1‑56 (MQ=255) ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaat < 1:3283885‑M2/91‑37 (MQ=255) ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaat < 1:2101627‑M2/91‑37 (MQ=255) ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaat < 1:1330666‑M2/91‑37 (MQ=255) ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaat < 1:1683285‑M2/91‑37 (MQ=255) ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGG‑Tttttattgtcaaattttcctttcacgcacaaaaacacgtttaaa < 1:2222492‑M2/91‑45 (MQ=255) cccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatc < 1:2539957‑M2/91‑38 (MQ=255) cAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaa < 1:2724552‑M2/91‑40 (MQ=255) cAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaa < 1:2415207‑M2/91‑40 (MQ=255) atatTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccggaaatcaagataa > 1:3173930‑M2/1‑47 (MQ=255) atatTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataa > 1:1932438‑M2/1‑47 (MQ=255) attattAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataata < 1:966282‑M2/91‑47 (MQ=255) attattAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataata > 1:265260‑M2/1‑45 (MQ=255) attattAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataata < 1:1819721‑M2/91‑47 (MQ=255) ttattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataa > 1:3727438‑M2/1‑44 (MQ=255) tattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa > 1:1000114‑M2/1‑43 (MQ=255) tattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa > 1:3319662‑M2/1‑43 (MQ=255) tattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa > 1:2573682‑M2/1‑43 (MQ=255) ttaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaac < 1:813395‑M2/91‑51 (MQ=255) aaGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgt > 1:740874‑M2/1‑39 (MQ=255) gtgtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaa < 1:516907‑M2/91‑56 (MQ=255) tgtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaa > 1:599631‑M2/1‑35 (MQ=255) gtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaa < 1:175185‑M2/91‑58 (MQ=255) tCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaag < 1:1160212‑M2/91‑59 (MQ=255) tCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaag < 1:1862080‑M2/91‑59 (MQ=255) cGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaaga < 1:1603539‑M2/91‑60 (MQ=255) gAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagat < 1:1230994‑M2/91‑61 (MQ=255) tCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatg > 1:1526904‑M2/1‑28 (MQ=255) cTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatga < 1:3570966‑M2/91‑65 (MQ=255) cTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatga < 1:3907180‑M2/91‑65 (MQ=255) ttAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgac > 1:561854‑M2/1‑26 (MQ=255) ttAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgac < 1:140977‑M2/91‑66 (MQ=255) ttAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgac > 1:445399‑M2/1‑26 (MQ=255) tAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacg > 1:3842103‑M2/1‑25 (MQ=255) ataataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa < 1:847954‑M2/91‑70 (MQ=255) ataataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa < 1:2456032‑M2/91‑70 (MQ=255) taataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaa > 1:481703‑M2/1‑21 (MQ=255) ataCTGGGGGTCTTTGTATatgcaatataatactactagaagtataaccgaaaatcaacataataaaacgttaaaagatatgacgaaaagt < 1:3537827‑M2/91‑73 (MQ=255) taCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtg < 1:2758892‑M2/91‑74 (MQ=255) tGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggga < 1:632333‑M2/91‑77 (MQ=255) tGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggga > 1:668571‑M2/1‑15 (MQ=255) tGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggga > 1:178487‑M2/1‑15 (MQ=255) gggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaa > 1:1717270‑M2/1‑14 (MQ=255) gggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaa < 1:3764296‑M2/91‑78 (MQ=255) gggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaa > 1:2184198‑M2/1‑14 (MQ=255) gggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaa < 1:237911‑M2/91‑78 (MQ=255) ggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaa < 1:882454‑M2/91‑79 (MQ=255) gggTTTTTTTATacgcaatataatactactagaagtataaccggaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaac > 1:4144306‑M2/1‑12 (MQ=255) gggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaac > 1:2615682‑M2/1‑12 (MQ=255) ggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaaca < 1:3804927‑M2/91‑81 (MQ=255) ggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaaca < 1:2872770‑M2/91‑81 (MQ=255) cTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacg < 1:1486680‑M2/91‑84 (MQ=255) cTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacg > 1:702303‑M2/1‑8 (MQ=255) | AAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012417/3028‑3125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |