| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 10273 = | 82 (0.830) | 4 (0.040) | 4/152 | NT | 5.6% | coding (322/813 nt) | nnrD | ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| ? | USA300TCH1516_ALE | 10302 = | 57 (0.610) | coding (293/813 nt) | nnrD | ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase | |||||
ATCGCATCGCCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTCTGGGC > USA300TCH1516_ALE/10212‑10392 | atcgcatcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGTATTATTTCCTTTGAAATCAACGCCaa < 1:2624726/91‑1 (MQ=255)atcgcatcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCaa > 1:1867586/1‑91 (MQ=255)atcgcatcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCaa < 1:2825028/91‑1 (MQ=255)atcgcatcgcCATCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCaa > 1:3475900/1‑91 (MQ=255) cgcatcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGa > 1:1183346/1‑91 (MQ=255) cgcatcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGa > 1:1183482/1‑91 (MQ=255) cgcatcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGa > 1:2269780/1‑91 (MQ=255) gcatcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGAc > 1:3693902/1‑91 (MQ=255) catcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGAcc > 1:1309770/1‑91 (MQ=255) tcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTg > 1:1882357/1‑91 (MQ=255) tcgcCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTg < 1:1437299/91‑1 (MQ=255) cGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGAcc < 1:553452/91‑1 (MQ=255) cTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAAt > 1:657230/1‑91 (MQ=255) tACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGTCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAAtt < 1:3599542/91‑1 (MQ=255) tACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAAtt < 1:3600064/91‑1 (MQ=255) aCGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTa < 1:1694755/91‑1 (MQ=255) cGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAg > 1:858324/1‑91 (MQ=255) aTTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGta > 1:3197952/1‑91 (MQ=255) aTTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGta > 1:3197992/1‑91 (MQ=255) aTTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGta > 1:3829787/1‑91 (MQ=255) ttAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGtat > 1:2159399/1‑91 (MQ=255) ttttGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgt < 1:2080168/91‑1 (MQ=255) tttGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtc > 1:3394728/1‑91 (MQ=255) tttGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtc > 1:3347612/1‑91 (MQ=255) tGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtcag < 1:4056834/91‑1 (MQ=255) tGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtcag < 1:1451397/91‑1 (MQ=255) tGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtcag < 1:90303/91‑1 (MQ=255) aTGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtccgtc > 1:3338090/1‑91 (MQ=255) aTGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtcagtc < 1:2150979/91‑1 (MQ=255) tGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTgtcagtca > 1:413040/1‑91 (MQ=255) gCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCAt > 1:1534003/1‑91 (MQ=255) ggTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCAttt < 1:3612394/91‑1 (MQ=255) tGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCaa < 1:3872444/91‑1 (MQ=255) tGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCaa < 1:2837968/91‑1 (MQ=255) gTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCaaa > 1:196914/1‑90 (MQ=255) gTATATTTTGTACTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAAt > 1:3206363/1‑91 (MQ=255) tatTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCAt < 1:1296298/91‑1 (MQ=255) ttttGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCAttt > 1:1806204/1‑91 (MQ=255) ttGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTc < 1:1679410/91‑1 (MQ=255) tGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCg > 1:3236729/1‑91 (MQ=255) tGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCg > 1:1068861/1‑91 (MQ=255) tGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCg > 1:1068847/1‑91 (MQ=255) tagtagGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTc < 1:1925882/91‑1 (MQ=255) tagtagGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTc < 1:1765292/91‑1 (MQ=255) agtagGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCa < 1:2594285/91‑1 (MQ=255) agGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACa < 1:2565781/91‑1 (MQ=255) agGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACa > 1:1586056/1‑91 (MQ=255) aaTGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACAttt > 1:2631324/1‑91 (MQ=255) aaTGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACAttt < 1:3495229/91‑1 (MQ=255) aaTGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTCCAATCATTTTCGTCAACAttt < 1:3605053/91‑1 (MQ=255) aTGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACAtttt > 1:1353299/1‑91 (MQ=255) gTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCg < 1:975833/91‑1 (MQ=255) aaTGGCATTATTTCCTTTGAAATCAACGCCAAGACATGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTa > 1:3790699/1‑91 (MQ=255) tggcgttgatttcaaaggaaataatgccaAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCATCAACATTTTCGTATc > 1:1111489‑M2/30‑91 (MQ=255) TGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATc > 1:2522860‑M1/1‑91 (MQ=255) TGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATc > 1:4042920‑M1/1‑91 (MQ=255) GGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCa < 1:1201499‑M1/91‑1 (MQ=255) cgttgatttcaaaggaaataatgccaAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCAtt > 1:1781990‑M2/27‑91 (MQ=255) gttgatttcaaaggaaataatgccaAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTa > 1:3621342‑M2/26‑91 (MQ=255) ttgatttcaaaggaaataatgccaAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTaa > 1:1884570‑M2/25‑91 (MQ=255) tttCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAatat > 1:1010969/1‑91 (MQ=255) ttCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATc < 1:2852781/91‑1 (MQ=255) ttCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATc < 1:2852537/91‑1 (MQ=255) tCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCa < 1:784782/91‑1 (MQ=255) ccTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCaa > 1:3153711/1‑91 (MQ=255) ccTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCaa > 1:3153664/1‑91 (MQ=255) ccTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATCTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCaa > 1:3154387/1‑91 (MQ=255) tttGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATa < 1:1864949/91‑1 (MQ=255) tGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAAc > 1:1735394/1‑91 (MQ=255) gAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCAGTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAAcc < 1:3310673/91‑1 (MQ=255) aaaTCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCa > 1:417040/1‑91 (MQ=255) aaaTCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCa > 1:418000/1‑91 (MQ=255) aaTCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCAt < 1:2694954/91‑1 (MQ=255) aaCGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCt > 1:394519/1‑91 (MQ=255) cGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTc < 1:2171910/91‑1 (MQ=255) ccaAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTCTg > 1:3628110‑M2/4‑91 (MQ=255) ccaAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTCTg > 1:1442825‑M2/4‑91 (MQ=255) ccaAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTCTg > 1:1442505‑M2/4‑91 (MQ=255) aAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTCTggg < 1:1330897‑M2/90‑1 (MQ=255) aGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTCTGGGc < 1:2408352/91‑1 (MQ=255) aGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTGCGTATCATTAATATCAATAACCATCGCTTCTGGGc < 1:3960382/91‑1 (MQ=255) | ATCGCATCGCCGTCTACGATTAAATTTTGATGCGGTTGTATATTTTGTAGTAGGAATGTAATGGCATTATTTCCTTTGAAATCAACGCCAAGACCTGGACCAATTAGTATACTGTCAGTCATTTCAATCATTTTCGTCAACATTTTCGTATCATTAATATCAATAACCATCGCTTCTGGGC > USA300TCH1516_ALE/10212‑10392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |