BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	236074 =	98 (1.000)	8 (0.090)	5/152	NT	7.4%	coding (486/1593 nt)	gsiA	Glutathione import ATP‑binding protein GsiA
*	?	USA300TCH1516_ALE	236115 =	108 (1.160)	8 (0.090)	5/152	NT	7.4%	coding (445/1593 nt)	gsiA	Glutathione import ATP‑binding protein GsiA

Only 100 of 134 total aligned reads displayed.

CGATTAAAATTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATGTTGAAA  >  USA300TCH1516_ALE/236025‑236205

cGATTAAAATTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCaaa                                                                                            >  1:3175975/1‑91 (MQ=255)

cGATTAAAATTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCaaa                                                                                            >  1:3175990/1‑91 (MQ=255)

 gATTAAAATTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAAt                                                                                           <  1:1771535/91‑1 (MQ=255)

     aaaaTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTc                                                                                       <  1:4088845/91‑1 (MQ=255)

      aaaTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCg                                                                                      >  1:3276349/1‑91 (MQ=255)

      aaaTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCg                                                                                      >  1:2409172/1‑91 (MQ=255)

       aaTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGa                                                                                     >  1:280687/1‑91 (MQ=255)

        aTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAg                                                                                    <  1:3470557/91‑1 (MQ=255)

        aTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAg                                                                                    >  1:1117424/1‑91 (MQ=255)

        aTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAg                                                                                    >  1:52121/1‑91 (MQ=255)

        aTTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAg                                                                                    >  1:3803878/1‑91 (MQ=255)

         tttGTGGCTTTAAAATCAATGCCATTGCTATCGTGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGt                                                                                   <  1:3213207/91‑1 (MQ=255)

            gtgGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTTTCGAGTTGc                                                                                >  1:215271/1‑91 (MQ=255)

            gtgGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGc                                                                                <  1:3034181/91‑1 (MQ=255)

            gtgGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGc                                                                                >  1:1874330/1‑91 (MQ=255)

             tgGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCa                                                                               <  1:2436628/91‑1 (MQ=255)

             tgGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCa                                                                               >  1:3692368/1‑91 (MQ=255)

             tgGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCa                                                                               >  1:3063320/1‑91 (MQ=255)

              ggCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCAt                                                                              <  1:3574747/91‑1 (MQ=255)

               gCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATg                                                                             >  1:3956938/1‑91 (MQ=255)

                cTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACAACCAGAAAGTTCATGAGGATAAGCGTCAAATTGTCGAGTAGCATgc                                                                            >  1:2770565/1‑90 (MQ=255)

                  ttAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGttt                                                                          <  1:1240895/91‑1 (MQ=255)

                       aTCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATAc                                                                     >  1:3425452/1‑91 (MQ=255)

                       aTCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATAc                                                                     >  1:67169/1‑91 (MQ=255)

                        tCAATGCCATTGCTATCATGCCACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATAAAATTGTCGTGTTGCATGTTTtatcaa                                                                    >  1:2697977/1‑88 (MQ=255)

                        tCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATAcc                                                                    <  1:3704384/91‑1 (MQ=255)

                        tCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATAcc                                                                    >  1:2698550/1‑91 (MQ=255)

                        tCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATAcc                                                                    <  1:3830228/91‑1 (MQ=255)

                        tCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATAcc                                                                    <  1:3546589/91‑1 (MQ=255)

                         cAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCt                                                                   <  1:3904906/91‑1 (MQ=255)

                          aaTGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTa                                                                  >  1:1077234/1‑91 (MQ=255)

                          aaTGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTa                                                                  >  1:397856/1‑91 (MQ=255)

                          aaTGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTa                                                                  >  1:397755/1‑91 (MQ=255)

                          aaTGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTa                                                                  >  1:1951882/1‑91 (MQ=255)

                           aTGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTAc                                                                 <  1:3960797/91‑1 (MQ=255)

                           aTGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTAc                                                                 <  1:2372089/91‑1 (MQ=255)

                           aTGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTAc                                                                 >  1:3388712/1‑91 (MQ=255)

                            tGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACt                                                                >  1:255826/1‑91 (MQ=255)

                            tGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACt                                                                >  1:3625513/1‑91 (MQ=255)

                            tGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACt                                                                <  1:1159049/91‑1 (MQ=255)

                             gCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACtt                                                               >  1:1542289/1‑91 (MQ=255)

                              ccATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACttt                                                              >  1:3947856/1‑91 (MQ=255)

                                  tGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCt                                                          >  1:891332/1‑91 (MQ=255)

                                     tATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTaaa                                                       >  1:3766478/1‑91 (MQ=255)

                                       tCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAAt                                                     >  1:417684/1‑91 (MQ=255)

                                       tCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAAt                                                     >  1:3942200/1‑91 (MQ=255)

                                        cATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATg                                                    >  1:3600618/1‑91 (MQ=255)

                                             cacGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTAt                                               <  1:2492155/91‑1 (MQ=255)

                                              acGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTAtt                                              >  1:1430712/1‑91 (MQ=255)

                                               cGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTg                                             >  1:1000047/1‑91 (MQ=255)

                                               cGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTg                                             >  1:715489/1‑91 (MQ=255)

                                                 ttgatgcttatccacatgaactttctggtggtatgcgtcaaATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTc                                           >  1:4028251‑M2/42‑91 (MQ=255)

                                                 TTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTc                                           <  1:767338‑M1/91‑1 (MQ=255)

                                                 TTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTc                                           <  1:2126262‑M1/91‑1 (MQ=255)

                                                   gatgcttatccacatgaactttctggtggtatgcgtcaaATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCAt                                         >  1:3927915‑M2/40‑91 (MQ=255)

                                                   GACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCAt                                         >  1:1369378‑M1/1‑91 (MQ=255)

                                                     cGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATct                                       >  1:669054/1‑90 (MQ=255)

                                                     cGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCg                                       >  1:170708/1‑91 (MQ=255)

                                                     cGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCg                                       <  1:2494185/91‑1 (MQ=255)

                                                     cGCATACCACCAGAAAGTTCATGTGGAT‑AGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGa                                      <  1:2867770/91‑1 (MQ=255)

                                                      gcttatccacatgaactttctggtggtatgcgtcaaATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGa                                      >  1:3666445‑M2/37‑91 (MQ=255)

                                                      gCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGa                                      >  1:1858158/1‑91 (MQ=255)

                                                      gCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGa                                      >  1:3004415/1‑91 (MQ=255)

                                                       cATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGAc                                     <  1:1805522/91‑1 (MQ=255)

                                                        aTACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTTGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACt                                    <  1:188627/91‑1 (MQ=255)

                                                        aTACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACt                                    <  1:1464272/91‑1 (MQ=255)

                                                         tatccacatgaactttctggtggtatgcgtcaaATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACtt                                   >  1:661958‑M2/34‑91 (MQ=255)

                                                         tatccacatgaactttctggtggtatgcgtcaaATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACtt                                   >  1:662092‑M2/34‑91 (MQ=255)

                                                         tACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACtt                                   >  1:3039033/1‑91 (MQ=255)

                                                         tACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACtt                                   >  1:3714945/1‑91 (MQ=255)

                                                         tACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACtt                                   <  1:1846780/91‑1 (MQ=255)

                                                         tACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACtt                                   >  1:805180/1‑91 (MQ=255)

                                                            caccaGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGc                                <  1:3806895/91‑1 (MQ=255)

                                                            caccaGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGc                                >  1:3128482/1‑91 (MQ=255)

                                                             accaGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCt                               <  1:3946476/91‑1 (MQ=255)

                                                             accaGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCt                               >  1:1236009/1‑91 (MQ=255)

                                                             accaGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCt                               >  1:3219668/1‑91 (MQ=255)

                                                               caGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTc                             <  1:477994/91‑1 (MQ=255)

                                                                aGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCa                            >  1:2287351/1‑91 (MQ=255)

                                                                 gAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAg                           >  1:1002946/1‑91 (MQ=255)

                                                                    aGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGAtt                        <  1:1141702/91‑1 (MQ=255)

                                                                    aGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGAtt                        >  1:1413052/1‑91 (MQ=255)

                                                                    aGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGAtt                        <  1:204557/91‑1 (MQ=255)

                                                                    aGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGAtt                        <  1:3933676/91‑1 (MQ=255)

                                                                     gTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGAttt                       >  1:3243605/1‑91 (MQ=255)

                                                                      ttCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTa                      <  1:310438/91‑1 (MQ=255)

                                                                       tCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAg                     >  1:381417/1‑91 (MQ=255)

                                                                        cATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGa                    >  1:3691613/1‑91 (MQ=255)

                                                                         aTGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGAt                   >  1:2221630/1‑91 (MQ=255)

                                                                         aTGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGAt                   >  1:2224772/1‑91 (MQ=255)

                                                                           gtgGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATac                 >  1:3305360/1‑91 (MQ=255)

                                                                             ggATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATacac               <  1:2172572/91‑1 (MQ=255)

                                                                             ggATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATacac               >  1:1236917/1‑91 (MQ=255)

                                                                                 aaGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGttt           <  1:1605736/91‑1 (MQ=255)

                                                                                    cATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATg        >  1:604637/1‑91 (MQ=255)

                                                                                    cATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATg        >  1:604351/1‑91 (MQ=255)

                                                                                    cATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATg        >  1:4118022/1‑91 (MQ=255)

                                                                                      tcaaATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATGtt      >  1:2847955‑M2/5‑91 (MQ=255)

                                                                                       caaATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATGTTg     >  1:48163‑M2/4‑91 (MQ=255)

                                                                                          aTTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATGTTGaaa  <  1:490212/91‑1 (MQ=255)

CGATTAAAATTTGTGGCTTTAAAATCAATGCCATTGCTATCATGACACGTTGACGCATACCACCAGAAAGTTCATGTGGATAAGCATCAAATTGTCGAGTTGCATGTTTTATACCTACTTTTTCTAAAATGTCTATTGTCATCGACTTTGCTTCAGATTTAGATACACGTTTATGTTGAAA  >  USA300TCH1516_ALE/236025‑236205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.