BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	414290 =	92 (0.940)	10 (0.110)	5/148	NT	11.0%	intergenic (‑32/‑632)	metI/spo0C	Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J
*	?	USA300TCH1516_ALE	414341 =	77 (0.850)	10 (0.110)	5/148	NT	11.0%	intergenic (‑83/‑581)	metI/spo0C	Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J

Only 100 of 118 total aligned reads displayed.

TCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAATT  >  USA300TCH1516_ALE/414251‑414431

tCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTa                                                                                            <  1:184601/91‑1 (MQ=255)

tCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTa                                                                                            >  1:398177/1‑91 (MQ=255)

tCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTa                                                                                            >  1:402667/1‑91 (MQ=255)

  cTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATg                                                                                          <  1:923156/91‑1 (MQ=255)

  cTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATg                                                                                          <  1:922775/91‑1 (MQ=255)

  cTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATg                                                                                          >  1:1574620/1‑91 (MQ=255)

   ttCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGt                                                                                         >  1:3335540/1‑91 (MQ=255)

     cATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGttt                                                                                       >  1:720207/1‑91 (MQ=255)

         ttAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTcgcg                                                                                   >  1:516220/1‑91 (MQ=255)

          tAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCgg                                                                                  <  1:1567663/91‑1 (MQ=255)

           aaGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGt                                                                                 <  1:598033/91‑1 (MQ=255)

            aGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTa                                                                                >  1:1406795/1‑91 (MQ=255)

             gACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTac                                                                               >  1:1047226/1‑91 (MQ=255)

              aCCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTacc                                                                              <  1:4029322/91‑1 (MQ=255)

               cccTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTacca                                                                             <  1:3877723/91‑1 (MQ=255)

                cctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccac                                                                            <  1:2135620/91‑1 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTacctcc                                                                           <  1:357833/91‑1 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccacc                                                                           <  1:357430/91‑1 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccacc                                                                           >  1:2048243/1‑91 (MQ=255)

                  tcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCt                                                                          <  1:3572105/91‑1 (MQ=255)

                  tcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCt                                                                          <  1:1565670/91‑1 (MQ=255)

                  tcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCt                                                                          >  1:818076/1‑91 (MQ=255)

                  tcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCt                                                                          <  1:3917903/91‑1 (MQ=255)

                    ctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCttt                                                                        <  1:249449/91‑1 (MQ=255)

                    ctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCttt                                                                        <  1:25506/91‑1 (MQ=255)

                       taAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTAtt                                                                     >  1:1043610/1‑91 (MQ=255)

                       taAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTAtt                                                                     >  1:448372/1‑91 (MQ=255)

                        aaGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTAttt                                                                    <  1:386102/91‑1 (MQ=255)

                        aaGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTAttt                                                                    <  1:386322/91‑1 (MQ=255)

                             aaaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAt                                                               <  1:846647/91‑1 (MQ=255)

                             aaaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAt                                                               <  1:3993668/91‑1 (MQ=255)

                              aaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAtt                                                              >  1:1470609/1‑91 (MQ=255)

                              aaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAtt                                                              <  1:737741/91‑1 (MQ=255)

                               aaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTc                                                             >  1:2058198/1‑91 (MQ=255)

                               aaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTc                                                             >  1:2058182/1‑91 (MQ=255)

                               aaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTc                                                             >  1:3379225/1‑91 (MQ=255)

                                aTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTcc                                                            >  1:2907486/1‑91 (MQ=255)

                                aTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTcc                                                            >  1:2412481/1‑91 (MQ=255)

                                aTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTcc                                                            <  1:772426/91‑1 (MQ=255)

                                 tAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCa                                                           <  1:1754231/91‑1 (MQ=255)

                                 tAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCa                                                           <  1:1820179/91‑1 (MQ=255)

                                    aaaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCg                                                        <  1:2440011/91‑1 (MQ=255)

                                    aaaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCg                                                        <  1:2186886/91‑1 (MQ=255)

                                    aaaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCg                                                        >  1:2850556/1‑91 (MQ=255)

                                     aaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGc                                                       <  1:2753578/91‑1 (MQ=255)

                                     aaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTAGGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGc                                                       >  1:1203018/1‑91 (MQ=255)

                                      aaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGCTATTCCATCGCt                                                      >  1:2058596/1‑91 (MQ=255)

                                           TTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAAt                                                 >  1:2923945‑M1/1‑91 (MQ=255)

                                           TTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAAt                                                 >  1:2159050‑M1/1‑91 (MQ=255)

                                            TCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATa                                                <  1:4105752‑M1/91‑1 (MQ=255)

                                            TCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATa                                                >  1:2041217‑M1/1‑91 (MQ=255)

                                             ccGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATaa                                               >  1:1926465/1‑91 (MQ=255)

                                              cgtcctttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAc                                              >  1:1656815‑M2/45‑91 (MQ=255)

                                              cGTCCTTCGTACCCGTATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACAACCTTTATTTGTTATTCCATCGCTGAAATAAc                                              >  1:3535276/1‑91 (MQ=255)

                                              cGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAc                                              <  1:3447159/91‑1 (MQ=255)

                                               gtcctttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAcc                                             >  1:912722‑M2/44‑91 (MQ=255)

                                               gTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGCTACCACCTTTATTTGTTATTTCAGCGATGGAATAAca                                             <  1:3490302/91‑2 (MQ=255)

                                               gTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGCTACCACCTTTATTTGTTATTCCATCGCTGAAATAAcc                                             <  1:3511827/91‑1 (MQ=255)

                                                tCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCt                                            >  1:3092984/1‑91 (MQ=255)

                                                 ccTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCtt                                           <  1:2653361/91‑1 (MQ=255)

                                                   tttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCCTTATTTGTTATTCCATCGCTGAAATAACCTTAt                                         >  1:2847587‑M2/40‑91 (MQ=255)

                                                   ttCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAt                                         <  1:1342249/91‑1 (MQ=255)

                                                    ttttatccgattgattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAtt                                        >  1:3182237‑M2/39‑91 (MQ=255)

                                                    ttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAtt                                        >  1:1337226‑M2/39‑91 (MQ=255)

                                                    ttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAtt                                        >  1:3182302‑M2/39‑91 (MQ=255)

                                                    ttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAtt                                        >  1:3181910‑M2/39‑91 (MQ=255)

                                                    ttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAtt                                        >  1:2391338‑M2/39‑91 (MQ=255)

                                                    tCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAtt                                        <  1:846884/91‑1 (MQ=255)

                                                        aCCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGt                                    <  1:1518982/91‑1 (MQ=255)

                                                          ccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTAc                                  >  1:3415815‑M2/33‑91 (MQ=255)

                                                            gaatgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGc                                >  1:1531187/1‑91 (MQ=255)

                                                             aatgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACGACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCa                               <  1:4137359/91‑1 (MQ=255)

                                                               tgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCAtt                             <  1:95258/91‑1 (MQ=255)

                                                               tgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCAtt                             <  1:2808576/91‑1 (MQ=255)

                                                                 aatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaa                           >  1:3651439/1‑91 (MQ=255)

                                                                 aatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaa                           >  1:1193439/1‑91 (MQ=255)

                                                                 aatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaa                           >  1:1193894/1‑91 (MQ=255)

                                                                  atCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaaa                          <  1:2354281/91‑1 (MQ=255)

                                                                   tCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaaaa                         >  1:385053/1‑91 (MQ=255)

                                                                     ggATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGt                       <  1:978770/91‑1 (MQ=255)

                                                                      gATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTa                      >  1:3984050/1‑91 (MQ=255)

                                                                       aTAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTaa                     >  1:4034189/1‑91 (MQ=255)

                                                                       aTAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTaa                     <  1:534944/91‑1 (MQ=255)

                                                                       aTAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTaa                     <  1:66341/91‑1 (MQ=255)

                                                                         aaaaaGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAat                   <  1:3518713/91‑1 (MQ=255)

                                                                            aaGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATg                >  1:1452738/1‑91 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           <  1:1106743/91‑1 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           >  1:3315159/1‑91 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           <  1:527639/91‑1 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           <  1:2198623/91‑1 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           <  1:2198776/91‑1 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           <  1:2199619/91‑1 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           <  1:23883/91‑1 (MQ=255)

                                                                                  gAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACt          >  1:818142/1‑91 (MQ=255)

                                                                                   aaaGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTg         <  1:1964093/91‑1 (MQ=255)

                                                                                   aaaGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTg         <  1:4039608/91‑1 (MQ=255)

                                                                                   aaaGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTg         <  1:4039344/91‑1 (MQ=255)

                                                                                    aagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGa        >  1:2614967‑M2/7‑91 (MQ=255)

                                                                                       cttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACa     <  1:2603175‑M2/88‑1 (MQ=255)

                                                                                          aTGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAtt  <  1:1751609/91‑1 (MQ=255)

TCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAATT  >  USA300TCH1516_ALE/414251‑414431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.