| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1205323 | 136 (1.340) | 146 (2.480) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG |
18/104 | 2.9 | 67.1% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | 2478252 = | 112 (1.100) | intergenic (+139/‑436) | USA300HOU_RS12760/USA300HOU_RS12765 | hypothetical protein/hypothetical protein | |||||
Only 100 of 565 total aligned reads displayed.
AAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATA > USA300TCH1516_ALE/1205234‑1205413 | aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAa < 1:305809‑M1/91‑2 (MQ=255) aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagc > 1:1530091‑M1/1‑88 (MQ=255) aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcg < 1:3195636‑M1/91‑5 (MQ=255) aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcg > 1:3096117‑M1/1‑87 (MQ=255) ttACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAc < 1:1712556/91‑1 (MQ=35) tACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaa < 1:1468753‑M1/91‑7 (MQ=255) aCATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAccc > 1:2288201/1‑91 (MQ=38) cATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagc < 1:3317009‑M1/91‑9 (MQ=255) cATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagc < 1:221682‑M1/91‑9 (MQ=255) aTGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagcc > 1:934399‑M1/1‑82 (MQ=255) aTGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcat > 1:1804684/1‑91 (MQ=40) gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccat < 1:2833355‑M1/91‑12 (MQ=255) gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccat > 1:3038382‑M1/1‑80 (MQ=255) gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccat < 1:1442337‑M1/91‑12 (MQ=255) ttAATACGTAGTATTAATGGCGAGACTTCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccatt < 1:2725623‑M1/91‑13 (MQ=255) ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccatt < 1:3345074‑M1/91‑13 (MQ=255) ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccatt < 1:698704‑M1/91‑13 (MQ=255) ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccatt < 1:2260250‑M1/91‑13 (MQ=255) tACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaat < 1:3644872‑M1/91‑17 (MQ=255) aCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaata < 1:631334‑M1/91‑18 (MQ=255) ctacgtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACAGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa > 1:168152/5‑91 (MQ=255) cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatac > 1:163247‑M1/1‑73 (MQ=255) tagtaTTAATGGCGAGGCTCCTGAGGGAGCAGTGCGAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatactt < 1:2564705‑M1/91‑21 (MQ=255) tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatactt < 1:3082427‑M1/91‑21 (MQ=255) tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacga > 1:2299250‑M1/1‑71 (MQ=255) tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacga < 1:465657‑M1/91‑21 (MQ=255) tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacga > 1:2698062‑M1/1‑71 (MQ=255) tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt > 1:1118546/1‑91 (MQ=255) tagtaTTAATGGCGAGACTCCTGAGGGAGCACTGCCAGTCGAAGACCGAGGCTGAGATGGCACCCTAGGAAGGGACCCATCATCAAAAAtt > 1:3288820/1‑91 (MQ=255) agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaa > 1:3217211‑M1/1‑70 (MQ=255) gtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacttcg < 1:925501‑M1/91‑23 (MQ=255) taTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagt > 1:2532455‑M1/1‑68 (MQ=255) taTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagt < 1:2608334‑M1/91‑24 (MQ=255) taTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagt > 1:344988‑M1/1‑68 (MQ=255) taTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagt > 1:1304170‑M1/1‑68 (MQ=255) aTTTATGGCGATTCTCCTGAGGGAGGAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgtagccattcaatacgaagta < 1:206778‑M1/91‑25 (MQ=255) aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt > 1:2387189/1‑91 (MQ=255) ttAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtat < 1:393249‑M1/91‑26 (MQ=255) ttAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtat < 1:3247150‑M1/91‑26 (MQ=255) tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtatt > 1:3467230‑M1/1‑65 (MQ=255) aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattg < 1:2153920‑M1/91‑28 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgt < 1:1762829‑M1/91‑29 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgt > 1:3403715‑M1/1‑63 (MQ=255) tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtata < 1:979531/91‑1 (MQ=255) ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtat > 1:2196231‑M1/1‑61 (MQ=255) gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtata > 1:2492104‑M1/1‑60 (MQ=255) gagaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaa < 1:2474247‑M1/91‑34 (MQ=255) agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaat < 1:294302‑M1/91‑35 (MQ=255) agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaat < 1:2587834‑M1/91‑35 (MQ=255) agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaat < 1:2444343‑M1/91‑35 (MQ=255) agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaat < 1:2365776‑M1/91‑35 (MQ=255) agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaat < 1:1390305‑M1/91‑35 (MQ=255) ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagaga > 1:1627070‑M1/1‑52 (MQ=255) ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagaga > 1:545330‑M1/1‑52 (MQ=255) cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaa > 1:1376206‑M1/1‑51 (MQ=255) cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaa < 1:820537‑M1/91‑41 (MQ=255) cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAg > 1:1253319/1‑91 (MQ=255) tGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTTAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaac < 1:3158158‑M1/91‑42 (MQ=255) tGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACAGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaac > 1:3119948‑M1/1‑50 (MQ=255) ctcaggagcaGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaac > 1:1877322‑M1/5‑50 (MQ=255) gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaaca < 1:2102258‑M1/91‑43 (MQ=255) gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaaca > 1:1035884‑M1/1‑49 (MQ=255) gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaaca > 1:371814‑M1/1‑49 (MQ=255) gggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagc > 1:597155‑M1/1‑47 (MQ=255) gggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagc > 1:2025430‑M1/1‑47 (MQ=255) gAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcag > 1:2753469‑M1/1‑45 (MQ=255) gAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcag < 1:2420407‑M1/91‑47 (MQ=255) gAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgt < 1:1572334/91‑1 (MQ=255) aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagt < 1:902620‑M1/91‑48 (MQ=255) cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa > 1:128202‑M1/1‑42 (MQ=255) cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa < 1:126740‑M1/91‑50 (MQ=255) cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa < 1:47512‑M1/91‑50 (MQ=255) cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGcc > 1:1013527/1‑91 (MQ=255) gTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaaga > 1:1547162‑M1/1‑40 (MQ=255) tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagat < 1:2772004‑M1/91‑53 (MQ=255) tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagat < 1:78979‑M1/91‑53 (MQ=255) tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagat < 1:34975‑M1/91‑53 (MQ=255) tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagat < 1:3598986‑M1/91‑53 (MQ=255) gCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata < 1:752675‑M1/91‑54 (MQ=255) gCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata > 1:1157325‑M1/1‑38 (MQ=255) gCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata < 1:1978269‑M1/91‑54 (MQ=255) cAGTCGAAGACCGAGGCTGAGGCGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataat < 1:3548617‑M1/91‑56 (MQ=255) cAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATgg < 1:868165/91‑1 (MQ=255) cGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCAt > 1:1920737/1‑91 (MQ=255) aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc < 1:2131438/91‑1 (MQ=255) gACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaatt < 1:1993833‑M1/91‑64 (MQ=255) gACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCg > 1:497858/1‑91 (MQ=255) ccGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattag < 1:357067‑M1/91‑66 (MQ=255) gCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaat < 1:290793‑M1/91‑71 (MQ=255) gCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaat < 1:1215059‑M1/91‑71 (MQ=255) cTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaata < 1:1608623‑M1/91‑72 (MQ=255) cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt < 1:2306005/91‑1 (MQ=34) cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt < 1:1491065/91‑1 (MQ=34) gagaCGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatatc < 1:1325958‑M1/91‑74 (MQ=255) cGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatgattttcaattagaaaatatcttgc < 1:1073865‑M1/91‑78 (MQ=255) aCCGTAGGAAagcgaagccattcaatacgaagtattgtataaatagaaaacagcagtaagataattttcaattagaaaatatcttactgct < 1:2985843‑M1/91‑82 (MQ=255) aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATActtcg < 1:418315/91‑5 (MQ=21) aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAg > 1:2642233/1‑91 (MQ=34) cccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCGAGATGGGCATAGCGAAGCCATTCAATACGAAGt < 1:2961326/91‑1 (MQ=18) gAAGGGAGCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGta < 1:1835516/91‑1 (MQ=21) | AAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATA > USA300TCH1516_ALE/1205234‑1205413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |