BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1205323	136 (1.340)	146 (2.480) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	18/104	2.9	67.1%	intergenic (‑204/‑365)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
*	?	USA300TCH1516_ALE	2478252 =	112 (1.100)	146 (2.480) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	18/104	2.9	67.1%	intergenic (+139/‑436)	USA300HOU_RS12760/USA300HOU_RS12765	hypothetical protein/hypothetical protein

Only 100 of 268 total aligned reads displayed.

ATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCA  >  USA300TCH1516_ALE/2478163‑2478342

cctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagaga                                                                                              <  1:2574683‑M2/1‑1 (MQ=255)

cctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagaga                                                                                              >  1:545330‑M2/91‑91 (MQ=255)

 tCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAAc                                                                                            <  1:2092449/91‑1 (MQ=255)

 ctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaa                                                                                             >  1:1619363‑M2/90‑91 (MQ=255)

 ctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaa                                                                                             <  1:820537‑M2/2‑1 (MQ=255)

 ctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaa                                                                                             <  1:820504‑M2/2‑1 (MQ=255)

 ctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaa                                                                                             >  1:182549‑M2/90‑91 (MQ=255)

 ctgagggagcagtgccagtcgaagaccgaggctgagaaggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagaa                                                                                             >  1:3127329‑M2/90‑91 (MQ=255)

   gagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAAca                                                                                           >  1:2522045‑M2/88‑91 (MQ=255)

   gagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAAca                                                                                           >  1:371814‑M2/88‑91 (MQ=255)

   gagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAAca                                                                                           >  1:296924‑M2/88‑91 (MQ=255)

      ggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAAcagca                                                                                        <  1:1528790‑M2/7‑1 (MQ=255)

      aaaTATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAAcagcag                                                                                       >  1:2122435/1‑91 (MQ=255)

       gagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAAcagcag                                                                                       >  1:2753469‑M2/84‑91 (MQ=255)

        agcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGt                                                                                      >  1:1290343‑M2/83‑91 (MQ=255)

        agcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGt                                                                                      <  1:902620‑M2/9‑1 (MQ=255)

        agcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGt                                                                                      >  1:3494098‑M2/83‑91 (MQ=255)

        agcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGt                                                                                      >  1:2413021‑M2/83‑91 (MQ=255)

        agcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGt                                                                                      >  1:228966‑M2/83‑91 (MQ=255)

        agcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGt                                                                                      >  1:2204062‑M2/83‑91 (MQ=255)

        agcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGt                                                                                      >  1:1088324‑M2/83‑91 (MQ=255)

         tatTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑‑AAAAAAACAGCAGTAAg                                                                                   <  1:2563763/91‑1 (MQ=255)

         gcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTa                                                                                     <  1:3336877‑M2/10‑1 (MQ=255)

         gcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTa                                                                                     <  1:1390211‑M2/10‑1 (MQ=255)

         gcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTa                                                                                     >  1:919619‑M2/82‑91 (MQ=255)

         gcactgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTa                                                                                     <  1:2868462‑M2/10‑1 (MQ=255)

          cagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTaa                                                                                    <  1:47512‑M2/11‑1 (MQ=255)

          atTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAg                                                                                   <  1:179722/91‑1 (MQ=255)

           agtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAg                                                                                   <  1:2711185‑M2/12‑1 (MQ=255)

           agtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAg                                                                                   <  1:1229768‑M2/12‑1 (MQ=255)

             tgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGAt                                                                                 <  1:2772004‑M2/14‑1 (MQ=255)

             tgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGAt                                                                                 <  1:3456372‑M2/14‑1 (MQ=255)

             tgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGAt                                                                                 <  1:78979‑M2/14‑1 (MQ=255)

             tgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGAt                                                                                 >  1:1013921‑M2/78‑91 (MQ=255)

             tgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGAt                                                                                 >  1:2107852‑M2/78‑91 (MQ=255)

             cGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATa                                                                                >  1:1025396/1‑91 (MQ=255)

              gccagtcgaagaccgaggctgagacggcaccctaggaaagtgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATa                                                                                >  1:3096616‑M2/77‑91 (MQ=255)

              gccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATa                                                                                <  1:1435220‑M2/15‑1 (MQ=255)

              gccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATa                                                                                >  1:1545758‑M2/77‑91 (MQ=255)

              gccagtcgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATa                                                                                <  1:1978269‑M2/15‑1 (MQ=255)

               ttAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAAt                                                                              >  1:3421221/1‑91 (MQ=255)

                cagtcgaagaccgaggctgaggcggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAAt                                                                              <  1:3548617‑M2/17‑1 (MQ=255)

                   tCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTc                                                                          >  1:725935/1‑91 (MQ=255)

                   tCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTc                                                                          >  1:2783800/1‑91 (MQ=255)

                    cgaagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTc                                                                          <  1:1985923‑M2/21‑1 (MQ=255)

                      aagaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑aa                                                                       <  1:1278296‑M2/23‑1 (MQ=255)

                       tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AAtt                                                                     >  1:1149853/1‑91 (MQ=255)

                       tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AAtt                                                                     >  1:3033596/1‑91 (MQ=255)

                        gaccgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AAtt                                                                     <  1:1993833‑M2/25‑1 (MQ=255)

                        gaccgaggctgagacggcaccctaggaaagcgaagccattaaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AAtt                                                                     <  1:3317787‑M2/25‑1 (MQ=255)

                        gATTATACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTa                                                                    <  1:294662/91‑1 (MQ=255)

                         accgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTa                                                                    <  1:1629017‑M2/26‑1 (MQ=255)

                         accgaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGAT‑ATTTTC‑AATTAg                                                                   <  1:3197970‑M2/26‑1 (MQ=255)

                            gaggctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGAT‑ATTTTC‑AATTAGaaa                                                                <  1:3697922‑M2/29‑1 (MQ=255)

                             gACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGaaaa                                                               <  1:225985/91‑1 (MQ=255)

                               gctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAa‑t                                                             <  1:892163‑M2/32‑1 (MQ=255)

                               gctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAa‑t                                                             <  1:1572017‑M2/32‑1 (MQ=255)

                               gctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAa‑t                                                             <  1:18665‑M2/32‑1 (MQ=255)

                                ctgagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAa‑ta                                                            <  1:1608623‑M2/33‑1 (MQ=255)

                                  ttGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCt                                                         >  1:2372910/1‑91 (MQ=255)

                                  ttGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCt                                                         >  1:1138716/1‑91 (MQ=255)

                                  gagacggcaccctaggaaagcgaagccattcattacgaagtattgtataaatagagAACAGCAGTAAGATAATTTGC‑AATTAGAAAA‑TATc                                                          <  1:3159674‑M2/35‑1 (MQ=255)

                                  gagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATc                                                          <  1:1224223‑M2/35‑1 (MQ=255)

                                  gagacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATc                                                          <  1:1325958‑M2/35‑1 (MQ=255)

                                   tGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCtt                                                        <  1:2823379/91‑1 (MQ=255)

                                    gacggcaccctaggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCtt                                                        <  1:3377948‑M2/37‑1 (MQ=255)

                                    gTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTa                                                       >  1:2356064/1‑91 (MQ=255)

                                     ttATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAc                                                      <  1:849005/91‑1 (MQ=21)

                                     ttATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAAGCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAc                                                      <  1:700714/91‑1 (MQ=255)

                                      tataTTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAct                                                     <  1:301053/91‑1 (MQ=255)

                                      tataTTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAct                                                     >  1:3278848/1‑91 (MQ=255)

                                       atatTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActg                                                    <  1:93493/91‑1 (MQ=255)

                                          accgtaggaaagcgaagccattcaatacgaagtattgtataaatagaaAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgct                                                  <  1:2985843‑M2/43‑1 (MQ=255)

                                            gAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTACTGCTGtt                                               <  1:3682235/91‑1 (MQ=18)

                                              aaataaatAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtct                                             >  1:1729315/1‑91 (MQ=255)

                                               aggaaagcgaagccattcaatacgaagtattgtataaatagagAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtct                                             <  1:1805521‑M2/48‑1 (MQ=255)

                                                  aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAt                                         >  1:2015268/1‑91 (MQ=255)

                                                  aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAt                                         <  1:2443172/91‑1 (MQ=255)

                                                    ataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAttt                                       >  1:44436/1‑91 (MQ=255)

                                                      aaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtat                                     <  1:1312872/91‑1 (MQ=255)

                                                       aaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtata                                    <  1:1644498/91‑1 (MQ=255)

                                                       aaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtata                                    <  1:3591303/91‑1 (MQ=255)

                                                        aCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATAc                                   >  1:66848/1‑91 (MQ=255)

                                                        aCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATAc                                   <  1:1190358/91‑1 (MQ=255)

                                                          tAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACaa                                 <  1:2827479/91‑1 (MQ=255)

                                                             agagTCTGGGACATTAATCCCTAAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATa                               <  1:2003203/91‑1 (MQ=255)

                                                             agagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATAc                              >  1:3205448/1‑91 (MQ=255)

                                                               agTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACtt                            <  1:584967/91‑1 (MQ=255)

                                                               agTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACtt                            <  1:2071258/91‑1 (MQ=255)

                                                                caatacgaagtattgtataaatagaaAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACtt                            <  1:2181157‑M2/65‑1 (MQ=255)

                                                                       aCATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGa                    <  1:253902/91‑1 (MQ=255)

                                                                       aCATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGa                    >  1:2667767/1‑91 (MQ=255)

                                                                        cATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGaa                   <  1:3042863/91‑1 (MQ=255)

                                                                          tattgtataaatagagAACAGCAGTAAGATATTTTCT‑AATTGAAAAT‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                  >  1:3233884‑M2/17‑91 (MQ=255)

                                                                            aaTCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc               >  1:1482046/1‑91 (MQ=37)

                                                                             aTCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAtaaat              >  1:3258602/1‑87 (MQ=255)

                                                                              tCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt             >  1:125658/1‑91 (MQ=37)

                                                                                     aaaaaaaCAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTAt       <  1:595095/91‑1 (MQ=32)

                                                                                       aaaaaCAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGc     <  1:2812728/91‑1 (MQ=34)

                                                                                          aaCAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCa  >  1:2614482/1‑91 (MQ=35)

ATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCA  >  USA300TCH1516_ALE/2478163‑2478342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.