New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1955657124 (1.220)18 (0.200) 12/158 8.0 13.8% intergenic (‑711/+411) gdmA/lukDv_2 Lantibiotic gallidermin/Leucotoxin LukDv
?USA300TCH1516_ALE = 1955663 116 (1.300)intergenic (‑717/+405) gdmA/lukDv_2 Lantibiotic gallidermin/Leucotoxin LukDv
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 133 total aligned reads displayed.

GAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTATT  >  USA300TCH1516_ALE/1955573‑1955752
                                                                                          |                                                                                         
gAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCa                                                                                           >  1:2667267/1‑91 (MQ=255)
   ggCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTGATATATTTAAAAAGACAAATAGAGCCCTTTCAGGc                                                                                        <  1:1366293/91‑1 (MQ=255)
   ggCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGc                                                                                        <  1:1518314/91‑1 (MQ=255)
   ggCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGc                                                                                        <  1:2308669/91‑1 (MQ=255)
   ggCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGc                                                                                        <  1:1151730/91‑1 (MQ=255)
    gCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGct                                                                                       >  1:2733299/1‑91 (MQ=255)
    gCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGACCCCTTTCAGTct                                                                                       >  1:1739947/1‑91 (MQ=255)
     cTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGctc                                                                                      <  1:1633151/91‑1 (MQ=255)
      tAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGctct                                                                                     <  1:1549966/91‑1 (MQ=255)
          tataAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTGttt                                                                                 >  1:2983879/1‑91 (MQ=255)
           ataAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTg                                                                                <  1:1975377/91‑1 (MQ=255)
           ataAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTg                                                                                <  1:1975363/91‑1 (MQ=255)
             aaaaaTACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCt                                                                              >  1:2908940/1‑91 (MQ=255)
              aaaaTACCTGGCGATTAATAAACTGTTTCCGTTATTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTg                                                                             <  1:3292890/91‑1 (MQ=255)
                aaTACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTa                                                                           >  1:1340376/1‑91 (MQ=255)
                 aTACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTAt                                                                          >  1:2042271/1‑91 (MQ=255)
                  tACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATc                                                                         <  1:501505/91‑1 (MQ=255)
                  tACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATGTGCTGTATc                                                                         <  1:1854762/91‑1 (MQ=255)
                    ccTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCt                                                                       >  1:2883904/1‑91 (MQ=255)
                       ggCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTaa                                                                    <  1:2983348/91‑1 (MQ=255)
                        gCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTaac                                                                   >  1:678677/1‑91 (MQ=255)
                         cGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTaaca                                                                  >  1:1012949/1‑91 (MQ=255)
                            ttAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAacaaca                                                               <  1:1608986/91‑1 (MQ=255)
                            ttAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAacaaca                                                               <  1:3501285/91‑1 (MQ=255)
                             taataaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAg                                                              >  1:407988/1‑91 (MQ=255)
                              aataaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGa                                                             >  1:3201187/1‑91 (MQ=255)
                                taaACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAg                                                           <  1:2809268/91‑1 (MQ=255)
                                 aaaCTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGc                                                          >  1:3512625/1‑91 (MQ=255)
                                  aaCTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGATGCt                                                         >  1:2916167/1‑91 (MQ=255)
                                    cTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGt                                                       <  1:1304626/91‑1 (MQ=255)
                                      gTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTa                                                     >  1:2710959/1‑91 (MQ=255)
                                      gTTTCCGTTGTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTa                                                     <  1:3552891/91‑1 (MQ=255)
                                       tttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaa                                                    >  1:538234/1‑91 (MQ=255)
                                       tttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaa                                                    >  1:535959/1‑91 (MQ=255)
                                        ttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaa                                                   >  1:2774866/1‑91 (MQ=255)
                                        ttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaa                                                   <  1:2582047/91‑1 (MQ=255)
                                        ttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGGATCCTTAACAACAGAAGCTGTTaaa                                                   >  1:3452188/1‑91 (MQ=255)
                                        ttCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTACTTGCTGTATCCTTAACAACAGAAGCTGTTaaa                                                   >  1:3159451/1‑91 (MQ=255)
                                         tCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaaa                                                  <  1:2125340/91‑1 (MQ=255)
                                         tCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTaaaa                                                  >  1:663816/1‑91 (MQ=255)
                                          ccGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAAc                                                 <  1:651410/91‑1 (MQ=255)
                                          ccGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAAc                                                 <  1:651327/91‑1 (MQ=255)
                                           cGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACt                                                >  1:175814/1‑91 (MQ=255)
                                           cGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACt                                                <  1:1353008/91‑1 (MQ=255)
                                           cGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACt                                                >  1:329319/1‑91 (MQ=255)
                                             ttttttAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTAc                                              <  1:768864/91‑1 (MQ=255)
                                              tttttAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTAcc                                             <  1:1034643/91‑1 (MQ=255)
                                              tttttAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTAcc                                             >  1:1908402/1‑91 (MQ=255)
                                                 ttAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGt                                          >  1:675480/1‑91 (MQ=255)
                                                  tAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTc                                         <  1:3653958/91‑1 (MQ=255)
                                                  tAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTAAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTc                                         >  1:2157621/1‑91 (MQ=255)
                                                    gCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCtt                                       <  1:1110276/91‑1 (MQ=255)
                                                    gCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCtt                                       <  1:1110477/91‑1 (MQ=255)
                                                       cTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTc                                    <  1:2437403/91‑1 (MQ=255)
                                                        ttAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTca                                   <  1:643931/91‑1 (MQ=255)
                                                        ttAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTca                                   <  1:699871/91‑1 (MQ=255)
                                                         tAATATATTTAAAAAGACAAATAGAGCCCTTTGAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTcac                                  <  1:3158940/91‑1 (MQ=255)
                                                         tAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTcac                                  <  1:3691150/91‑1 (MQ=255)
                                                         tAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTcac                                  <  1:169597/91‑1 (MQ=255)
                                                           atatatTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACaa                                <  1:1387828/91‑1 (MQ=255)
                                                           atatatTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACaa                                <  1:1386729/91‑1 (MQ=255)
                                                              tatTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCa                             >  1:2940290/1‑91 (MQ=255)
                                                                tttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCaaa                           <  1:908127/91‑1 (MQ=255)
                                                                tttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCaaa                           >  1:482017/1‑91 (MQ=255)
                                                                tttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCaaa                           >  1:482491/1‑91 (MQ=255)
                                                                tttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCaaa                           <  1:2750902/91‑1 (MQ=255)
                                                                tttAAAAAGACAAATAGAGCCCTTTCAGGCTCTACTTGCTGAATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTGACAACCaaa                           >  1:482099/1‑91 (MQ=255)
                                                                 ttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAg                          >  1:1419633/1‑91 (MQ=255)
                                                                 ttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAg                          >  1:676971/1‑91 (MQ=255)
                                                                 ttAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAg                          >  1:2194136/1‑91 (MQ=255)
                                                                  tAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGc                         <  1:1171624/91‑1 (MQ=255)
                                                                   aaaaaGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCt                        >  1:1410116/1‑91 (MQ=255)
                                                                     aaaGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTAc                      <  1:2585057/91‑1 (MQ=255)
                                                                     aaaGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTAc                      <  1:3581744/91‑1 (MQ=255)
                                                                       aGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACaa                    <  1:232523/91‑1 (MQ=255)
                                                                         aCAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACaaaa                  <  1:2768466/91‑1 (MQ=255)
                                                                         aCAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACaaaa                  >  1:2158358/1‑91 (MQ=255)
                                                                           aaaTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACaaaaaa                <  1:340091/91‑1 (MQ=255)
                                                                           aaaTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACaaaaaa                <  1:3114299/91‑1 (MQ=255)
                                                                           aaaTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGACTTTTCACAACCAAAGCTACaaagaa                <  1:3113479/91‑1 (MQ=255)
                                                                             aTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGa              <  1:3650279/91‑1 (MQ=255)
                                                                             aTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGa              >  1:93198/1‑91 (MQ=255)
                                                                             aTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGa              >  1:1908942/1‑91 (MQ=255)
                                                                             aTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGa              <  1:2928161/91‑1 (MQ=255)
                                                                             aTAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGa              <  1:2928126/91‑1 (MQ=255)
                                                                                gagCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATgg           <  1:950388/91‑1 (MQ=255)
                                                                                   cccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTa        <  1:1764540/91‑1 (MQ=255)
                                                                                   cccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTa        <  1:1176495/91‑1 (MQ=255)
                                                                                   cccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTa        <  1:3269585/91‑1 (MQ=255)
                                                                                    ccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAg       >  1:2599692/1‑91 (MQ=255)
                                                                                    ccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAg       >  1:2139622/1‑91 (MQ=255)
                                                                                    ccTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAg       <  1:1373855/91‑1 (MQ=255)
                                                                                     cTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGt      <  1:2473794/91‑1 (MQ=255)
                                                                                     cTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGt      >  1:2298760/1‑91 (MQ=255)
                                                                                      tttCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGtt     >  1:1999835/1‑91 (MQ=255)
                                                                                      tttCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGtt     >  1:1708787/1‑91 (MQ=255)
                                                                                      tttCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGATGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGtt     >  1:3130366/1‑91 (MQ=255)
                                                                                      tttCAGGCGCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGtt     >  1:245548/1‑91 (MQ=255)
                                                                                       ttCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTa    <  1:3654865/91‑1 (MQ=255)
                                                                                        tCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTAt   >  1:402129/1‑91 (MQ=255)
                                                                                          |                                                                                         
GAAGGCTAATTATAAAAATACCTGGCGATTAATAAACTGTTTCCGTTTTTTAGCACTTAATATATTTAAAAAGACAAATAGAGCCCTTTCAGGCTCTATTTGCTGTATCCTTAACAACAGAAGCTGTTAAAACTACCCGTCTTTTCACAACCAAAGCTACAAAAAAGATGGCTAGTTATT  >  USA300TCH1516_ALE/1955573‑1955752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.