Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1534622	1534655	34	2 [1]	[1] 2	lapB	Lipopolysaccharide assembly protein B

AAAGTAATGTAGTCATTATTTTAATTGCTTCTTGAGTGATGTCATTTTTATCGTAAGAAATGGCTTTTTTGAGATAATCTTCTGAAGTCATTTCATCTTCATTAATTTCATCGTATAAGCGAATCGCATCACTATAGTTACCACTTTGTAAACTAC  >  USA300TCH1516_ALE/1534649‑1534804        |                                                                                                                                                     aaaGTAATGTAGTCATTATTTTAATTGCTTCTTGAGTGATGTCATTTTTATCGTAAGAAATGGCTTTTTTGAGATAATCTTCTGAAGTCATTTCATCTTCATTAATTTCATCGTATAAGCGAATCGCATCACTATAGTTACCACTTTGt         >  1:162592/1‑149 (MQ=255)        tGTAGTCATTATTTTAATTGCTTCTTGAGTGATGTCATTTTTATCGTAAGAAATGGCTTTTTTGAGATAATCTTCTGAAGTCATTTCATCTTCATTAATTTCATCGTATAAGCGAATCGCATCACTATAGTTACCACTTTGTAAACTAc  <  1:180520/149‑1 (MQ=255)        |                                                                                                                                                     AAAGTAATGTAGTCATTATTTTAATTGCTTCTTGAGTGATGTCATTTTTATCGTAAGAAATGGCTTTTTTGAGATAATCTTCTGAAGTCATTTCATCTTCATTAATTTCATCGTATAAGCGAATCGCATCACTATAGTTACCACTTTGTAAACTAC  >  USA300TCH1516_ALE/1534649‑1534804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑