| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | USA300TCH1516_ALE | 2,709,677 | Δ12 bp | 100% | coding (1239‑1250/1812 nt) | oatA_2 ← | O‑acetyltransferase OatA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2709676 | 2 (0.050) | 49 (1.280) | 39/260 | NT | 96.1% | coding (1251/1812 nt) | oatA_2 | O‑acetyltransferase OatA |
| ? | USA300TCH1516_ALE | 2709689 = | 2 (0.050) | coding (1238/1812 nt) | oatA_2 | O‑acetyltransferase OatA | |||||
AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2709538‑2709676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAAG > USA300TCH1516_ALE/2709689‑2709827 AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATT > 1:646980/1‑141 GACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TT < 1:72927/141‑1 CATTACCAATATCCCCCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCT < 1:536807/141‑1 ATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTTTTTTATTCTCT‑TTCTT > 1:99937/1‑141 CAATATCCACCCTGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTACTATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTACCGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGG < 1:284754/141‑1 CAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGG < 1:547464/141‑1 AATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCGTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGC > 1:565102/1‑141 AATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGC > 1:90893/1‑141 AATATCCACCATGACCGAGTCACAACTTAATAGTGGTGATGACTTTTTAATATCCTCTTTTCTATTCCCTGTCTGCTTATCATCTTGCTTATCTTTTTTGACGACTTTTTTCTTTCTTGGTTTATTCTCT‑TTTTTtttgct > 1:166561/1‑135 ATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTC < 1:725453/141‑1 TCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCt > 1:97194/1‑140 ACCATGACCGAGTCACCAATTAATAGTGGTGAGGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGT > 1:863789/1‑141 CCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTT > 1:793886/1‑141 ATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGT < 1:307972/141‑1 GAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCA > 1:174518/1‑141 CCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCc > 1:123631/1‑140 CCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCA > 1:180707/1‑141 TTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAA > 1:501897/1‑141 AATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATACTATGGCTTATATTTTGTATTGACTTTTTTCTTCGTTGTTTTATTCTCT‑TGCTTCTCGGCTTCATGTTTTTTGCCAAGTGCATCAAAC > 1:860316/1‑141 ATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACT < 1:37908/141‑1 AGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGT < 1:253533/141‑1 GGTGATGCCTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCCTTGTTTCTTTCTCT‑CTCAAATCTCGTTCATGTTGATTGCCAAGTGCATTTAACTGTCCA < 1:638022/141‑1 TGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACT > 1:541815/1‑141 TGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAG > 1:862522/1‑141 TGACTTTTTAAGATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAG < 1:4304/141‑1 TGACTTTGTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCACACTGTCCACTTAG > 1:546230/1‑141 GACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTATTCAAGCTACGTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGC < 1:634117/141‑1 TAATTTCCTCCTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGA < 1:277979/141‑1 TAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGA < 1:618154/141‑1 TAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGA < 1:498155/141‑1 TCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGAC > 1:448013/1‑141 CTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAAT > 1:683306/1‑141 tTTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAA < 1:657814/140‑1 ATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAA > 1:687482/1‑141 TTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCCTCAAACTGTCCACTGCGCACAACGATAGACGGAACCAATAAT > 1:31626/1‑141 TCGCTGTTTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATA < 1:422941/141‑1 CGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTT‑TACGATGGTCTGCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAG < 1:200870/141‑1 GTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATA < 1:81758/141‑1 GTCTGCTTATCCTCTTGCTTATCTGTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATA > 1:556960/1‑141 TCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGATGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAA > 1:167421/1‑141 CTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAA > 1:774631/1‑141 ATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAA > 1:678771/1‑141 TCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAAT > 1:676134/1‑141 TCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAAT > 1:752418/1‑141 TCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAAT > 1:317438/1‑141 TTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATCGCC < 1:120606/141‑1 TTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCCTCATGGTGGTTGCAAAGTAAATCAGCCTTTGCACTGAGATCATCGATATACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCC < 1:204179/141‑1 AACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTCGCAAATTGCCCCTT > 1:515336/1‑141 TTTTCTCTTCGTTGTTTTATTCTCG‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGTCGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTT < 1:336559/141‑1 TTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGG > 1:854783/1‑141 TTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAA > 1:866586/1‑141 TATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAAG < 1:668675/141‑1 AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2709538‑2709676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAAG > USA300TCH1516_ALE/2709689‑2709827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |