| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | USA300TCH1516_ALE | 2,709,677 | Δ12 bp | 100% | coding (1239‑1250/1812 nt) | oatA_2 ← | O‑acetyltransferase OatA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2709676 | 2 (0.050) | 49 (1.280) | 39/260 | NT | 96.1% | coding (1251/1812 nt) | oatA_2 | O‑acetyltransferase OatA |
| ? | USA300TCH1516_ALE | 2709689 = | 2 (0.050) | coding (1238/1812 nt) | oatA_2 | O‑acetyltransferase OatA | |||||
AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAAATTCCGTCTTCTTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTA > USA300TCH1516_ALE/2709538‑2709815 | aGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAtt > 1:646980‑M1/1‑139 (MQ=255) gACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctcttt < 1:72927‑M1/141‑9 (MQ=255) cATTACCAATATCCCCCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttct < 1:536807‑M1/141‑11 (MQ=255) aTTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTTTTTTAttctctttctt > 1:99937‑M1/1‑130 (MQ=255) cAATATCCACCCTGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTACTATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTACCGACTTTTTTCTTCGTTGTTTTAttctctttcttctcgg < 1:284754‑M1/141‑17 (MQ=255) cAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcgg < 1:547464‑M1/141‑17 (MQ=255) aaTATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCGTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggc > 1:565102‑M1/1‑124 (MQ=255) aaTATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggc > 1:90893‑M1/1‑124 (MQ=255) aaTATCCACCATGACCGAGTCACAACTTAATAGTGGTGATGACTTTTTAATATCCTCTTTTCTATTCCCTGTCTGCTTATCATCTTGCTTATCTTTTTTGACGACTTTTTTCTTTCTTGGTTTAttctctttttttttgct > 1:166561‑M1/1‑124 (MQ=255) atCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttc < 1:725453‑M1/141‑21 (MQ=255) tCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttct > 1:97194‑M1/1‑120 (MQ=255) accaTGACCGAGTCACCAATTAATAGTGGTGAGGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgt > 1:863789‑M1/1‑117 (MQ=255) ccaTGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgtt > 1:793886‑M1/1‑116 (MQ=255) aTGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgt < 1:307972‑M1/141‑28 (MQ=255) gAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgcca > 1:174518‑M1/1‑108 (MQ=255) ccAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcc > 1:123631‑M1/1‑102 (MQ=255) ccAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgca > 1:180707‑M1/1‑102 (MQ=255) ttAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaa > 1:501897‑M1/1‑98 (MQ=255) aaTAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATACTATGGCTTATATTTTGTATTGACTTTTTTCTTCGTTGTTTTAttctcttgcttctcggcttcatgttttttgccaagtgcatcaaac > 1:860316‑M1/1‑96 (MQ=255) aTAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaact < 1:37908‑M1/141‑47 (MQ=255) aGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgt < 1:253533‑M1/141‑49 (MQ=255) ggtgATGCCTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCCTTGTTTCTttctctctcaaatctcgttcatgttgattgccaagtgcatttaactgtcca < 1:638022‑M1/141‑52 (MQ=255) tgatgaCTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccact > 1:541815‑M1/1‑88 (MQ=255) tgaCTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgag > 1:862522‑M1/1‑85 (MQ=255) tgaCTTTTTAAGATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgag < 1:4304‑M1/141‑57 (MQ=255) tgaCTTTGTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcacactgtccacttag > 1:546230‑M1/1‑85 (MQ=255) gaCTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTATTCAAGCTACGTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagc < 1:634117‑M1/141‑58 (MQ=255) tAATTTCCTCCTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacga < 1:277979‑M1/141‑65 (MQ=255) tAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacga < 1:618154‑M1/141‑65 (MQ=255) tAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacga < 1:498155‑M1/141‑65 (MQ=255) tAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAAATTCCGTCTTCTTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCAc < 1:586400/141‑1 (MQ=255) tCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagac > 1:448013‑M1/1‑72 (MQ=255) cTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaat > 1:683306‑M1/1‑63 (MQ=255) tttcGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataa < 1:657814‑M1/140‑81 (MQ=255) aTTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataa > 1:687482‑M1/1‑61 (MQ=255) ttCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcctcaaactgtccactgcgcacaacgatagacggaaccaataat > 1:31626‑M1/1‑60 (MQ=255) tCGCTGTTTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataata < 1:422941‑M1/141‑83 (MQ=255) cGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTacgatggtctgctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataatag < 1:200870‑M1/141‑84 (MQ=255) gTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggata < 1:81758‑M1/141‑88 (MQ=255) gTCTGCTTATCCTCTTGCTTATCTGTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggata > 1:556960‑M1/1‑54 (MQ=255) tCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGATGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataa > 1:167421‑M1/1‑53 (MQ=255) tGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAAATTCCGTCTTCTTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCaat > 1:556148/1‑141 (MQ=255) cTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaa > 1:774631‑M1/1‑49 (MQ=255) aTCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaa > 1:678771‑M1/1‑34 (MQ=255) tCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaat > 1:752418‑M1/1‑33 (MQ=255) tCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaat > 1:676134‑M1/1‑33 (MQ=255) tCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaat > 1:317438‑M1/1‑33 (MQ=255) ttttAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaatcgcc < 1:120606‑M1/141‑113 (MQ=255) ttttAACGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcctcatggtggttgcaaagtaaatcagcctttgcactgagatcatcgatatacggaaccaataataggataactaacactgttctagcaaattgcc < 1:204179‑M1/141‑113 (MQ=255) aaCGACTTTTTTCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctcgcaaattgcccctt > 1:515336‑M1/1‑25 (MQ=255) ttttctCTTCGTTGTTTTAttctcgttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagtcggaaccaataataggataactaacactgttctagcaaattgccccttcttttt < 1:336559‑M1/141‑123 (MQ=255) tttCTTCGTTGTTTTAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaattgccccttctttttagg > 1:854783‑M1/1‑16 (MQ=255) ttAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaattgccccttctttttaggtaaaaatgcaaaa > 1:866586‑M1/1‑3 (MQ=255) tAttctctttcttctcggcttcatgttgtttgccaagtgcatcaaactgtccactgagcacaacgatagacggaaccaataataggataactaacactgttctagcaaattgccccttctttttaggtaaaaatgcaaaag < 1:668675‑M1/141‑140 (MQ=255) | AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTAAATTCCGTCTTCTTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTA > USA300TCH1516_ALE/2709538‑2709815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |