| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | USA300TCH1516_ALE | 2,709,677 | Δ12 bp | coding (1239‑1250/1812 nt) | oatA_2 ← | O‑acetyltransferase OatA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2709676 | 12 (0.190) | 51 (0.810) | 45/280 | 0.6 | 81.6% | coding (1251/1812 nt) | oatA_2 | O‑acetyltransferase OatA |
| ? | USA300TCH1516_ALE | 2709689 = | 11 (0.180) | coding (1238/1812 nt) | oatA_2 | O‑acetyltransferase OatA | |||||
AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2709538‑2709676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAA > USA300TCH1516_ALE/2709689‑2709825 AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATT < 2:109988/141‑1 AAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT < 1:324973/141‑1 AGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTT < 1:671341/141‑1 AATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGC > 1:385615/1‑141 TATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTT < 1:732395/141‑1 tTCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTC < 1:41663/140‑1 ATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTC < 1:535656/141‑1 TCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCA < 2:407318/141‑1 CCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCAT < 1:610273/141‑1 CCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGC > 1:977969/1‑141 CGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCC < 2:187185/141‑1 GAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCA > 2:80060/1‑141 GTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAG < 1:859847/141‑1 CACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTG < 1:128851/141‑1 CAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCAT < 2:305315/141‑1 CAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCAT > 1:675762/1‑141 AATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGCCTGCCTCTCCTCTTGCTCATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCCCTTTTTTCTCGGCTTCATGTTGTTTGCCACGTGCATC > 1:325709/1‑141 TAGTGGTGATGACTTTTTACTATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTG < 1:211195/141‑1 TAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTG < 1:487552/141‑1 TAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTG < 1:211210/141‑1 AGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGT > 1:203649/1‑141 TAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGA > 1:929275/1‑141 AATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGAT > 1:74478/1‑141 ATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATCGA > 1:525709/1‑141 ATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGA < 1:347419/141‑1 TCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGAC > 1:402935/1‑141 CCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACG > 1:893419/1‑141 CTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAA < 1:677920/141‑1 CTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAA < 1:302103/141‑1 TTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCCAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAAT > 2:206888/1‑141 TTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAAT > 1:176165/1‑141 TCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATA < 1:196098/141‑1 TCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAA > 1:369867/1‑141 TTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGACTCCAGTATAGGATAACTAAC > 1:52907/1‑141 TTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAAC < 1:756187/141‑1 TCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTT > 2:174505/1‑141 CTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTC < 1:140956/141‑1 GCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAG < 2:315813/141‑1 CTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGC < 1:74090/141‑1 TCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAAT > 1:122957/1‑141 TTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTG > 1:37327/1‑141 TTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCC < 2:278175/141‑1 TTAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCC > 2:405891/1‑141 TAACGACTTTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCT < 1:894488/141‑1 TTTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTA > 1:700272/1‑141 TTTTCTTCGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAG > 1:219424/1‑141 CGTTGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAA > 1:533203/1‑141 TGTTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGC > 1:813510/1‑141 TTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCACACTGTCCCCTGAGCCCACCGCTAGCCGCAACCCATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAA < 1:93146/141‑1 TTTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAA < 1:90140/141‑1 TTTATTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTCTAGGTAAAAATGCAAA < 1:623074/141‑1 AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2709538‑2709676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCTCTTTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAA > USA300TCH1516_ALE/2709689‑2709825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |