Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000731	24860	24988	129	2 [1]	[1] 3	USA300HOU_pUSA300HOUMR0030	Sin recombinase

AAACGTGTTATTTATCATCGCGTGGTGGAAATGTTAGAAGAAGGCAAAGCGATTAGTAAGATTGCGAAAGAAGTTAATATCACAAGACAAACAGTTTATAGAATTAAACATGATAAGGGATTATCTTGATAAATTGATTGTCAATGCAAATGAGCG  >  CP000731/24974‑25129                |                                                                                                                                             aaaCGTGGTATGTATCATCACGGTTTGTAAATGTTAGAGTAAGTCATTTCGGTTATTGAGAGTTCGAAAGAAGTTAATATCACAAGACAAACAGTTTATAGAATTAAACATGATAAGGGATTATCTTGATAAATTGATTGt                 <  1:89256/141‑1 (MQ=255)                catcGCGTGGTGGAAATGTTAGAAGAAGGCAAAGCGATTAGTAAGATTGCGAAAGAAGTTAATATCACAAGACAAACAGTTTATAGAATTAAACATGATAAGGGATTATCTTGATAAATTGATTGTCAATGCAAATGAGCg  <  1:529524/141‑1 (MQ=255)                catcGCGTGGTGGAAATGTGAGAAGAAGGCAAAGCGATTAGTAAGATTGCGAAAGAAGTTAATATCACAAGACAAACGGTTTATAGAATTAAACATGATAAGGGATTATCTTGATAAATTGATTGTCAATGCAAATGAGCg  <  1:247653/141‑1 (MQ=255)                |                                                                                                                                             AAACGTGTTATTTATCATCGCGTGGTGGAAATGTTAGAAGAAGGCAAAGCGATTAGTAAGATTGCGAAAGAAGTTAATATCACAAGACAAACAGTTTATAGAATTAAACATGATAAGGGATTATCTTGATAAATTGATTGTCAATGCAAATGAGCG  >  CP000731/24974‑25129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑