New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	34 =	33 (0.340)	3 (0.030)	3/246	NT	7.2%	intergenic (–/‑198)	–/repA	–/replication protein A
	?	CP000731	65 =	46 (0.500)					intergenic (–/‑167)	–/repA	–/replication protein A

TTTATTTAGCTTTACATTTATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/180‑34 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAA  >  CP000731/65‑204                                                                                                                                                                                                                                                                                                 TTTATTTAGCTTTACATTTATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG                                                                                                                                                    <  2:255507/141‑1   TATTTAGCTTTACATTTATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG                                                                                                                                                  <  1:467001/141‑1    ATTTAGCTTTACATTTATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG                                                                                                                                                 >  1:384325/1‑141    ATTTAGCTTTACATTTATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG                                                                                                                                                 >  1:488928/1‑141       TAGCTTTACATTTATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT                                                                                                                                              <  1:623695/141‑1                   TATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACG                                                                                                                                  <  1:465999/141‑1                                         CACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAGATAAACAGTTTCTAAACGTTTTATTACCAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATCTATAT                                                                                                            <  1:33593/141‑1                                                                                                                                    CCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTA                 >  1:14804/1‑141                                                                                                                                             GGGGTTTTGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTT        >  1:623242/1‑141                                                                                                                                             GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTT        <  2:229248/141‑1                                                                                                                                              GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTA       <  1:20957/141‑1                                                                                                                                               GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAC      <  1:719879/141‑1                                                                                                                                               GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAC      >  1:774346/1‑141                                                                                                                                                  TTGGTAATAAAACGTTTAGAAACTGTTTATTTATGTAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAA   <  1:729194/141‑1                                                                                                                                                   TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAA  >  1:716430/1‑141                                                                                                                                                   TGGTAATAAAACGTTTAAAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAA  <  2:320291/141‑1                                                                                                                                                                                                                                                                                                 TTTATTTAGCTTTACATTTATTTAATGATTTAGGTGCTTGCACTAAGATATTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/180‑34 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAA  >  CP000731/65‑204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.