New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 368778	52 (1.130)	3 (0.070)	3/250	NT	6.4%	intergenic (+212/+66)	bglK/ybbH_2	Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH
	?	USA300TCH1516_ALE	= 368819	38 (0.860)					intergenic (+253/+25)	bglK/ybbH_2	Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH

GTTCCACACATCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/368634‑368778 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacct‑GCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAATTTTAATATCTCAGCTTCTTCAATTTAATTTGCCCGTGGCACACTGT  <  USA300TCH1516_ALE/368819‑368683                                                                                                                                                                                                                                                                                             GTTCCACACATCACACTCTATCTAGGACCAATCTAAACTATATCAATCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGC                                                                                                                                                <  2:85667/141‑1                                         TATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT‑GCAACTGTAGACAATCATCGTGATTGTCCCAACGAG                                                                                                       <  1:58584/141‑1                                                    AGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT‑GCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGC                                                                                            <  1:441502/141‑1                                                                        AATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCA                                                                         <  1:738873/141‑1                                                                                                                                             CACCT‑GCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAATTTTAATATCTCAGCTTCTTCAATTTAATTTGCCCGTGGCACACTG   <  1:648858/141‑1                                                                                                                                              ACCT‑GCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAATTTTAATATCTCAGCTTCTTCAATTTAATTTGCCCGTGGCACACTGT  >  2:43914/1‑141                                                                                                                                                                                                                                                                                             GTTCCACACATCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/368634‑368778 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacct‑GCAACTGTAGACAATCATCGTGATTGTCCCAACGAGTTGCTAGGTGCTTTTTTAATTTCAATACCAAATATTTTTTTACATTTTCTAAAATTTTAATATCTCAGCTTCTTCAATTTAATTTGCCCGTGGCACACTGT  <  USA300TCH1516_ALE/368819‑368683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.