New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 368778	52 (1.130)	3 (0.070)	3/250	NT	6.4%	intergenic (+212/+66)	bglK/ybbH_2	Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH
	?	USA300TCH1516_ALE	= 368819	38 (0.860)					intergenic (+253/+25)	bglK/ybbH_2	Beta‑glucoside kinase/putative HTH‑type transcriptional regulator YbbH

CACATCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATG  >  USA300TCH1516_ALE/368640‑368915                                                                                                                                           |                                                                                                                                          cacaTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAg                                                                                                                                         <  1:737573/141‑1 (MQ=255)   caTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCa                                                                                                                                       <  1:743945/141‑1 (MQ=255)    aTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAACTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCaa                                                                                                                                      <  1:401242/141‑1 (MQ=255)       acacTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTc                                                                                                                                   >  2:176159/1‑141 (MQ=255)       acacTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTc                                                                                                                                   >  2:44629/1‑141 (MQ=255)        cacTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCg                                                                                                                                  <  1:116232/141‑1 (MQ=255)         acTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATGAAAAAAGCACCTAGCAACTCGt                                                                                                                                 >  1:425996/1‑141 (MQ=255)                   ggACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATc                                                                                                                       <  2:5647/141‑1 (MQ=255)                          tCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACgatga                                                                                                                <  1:631173/141‑1 (MQ=255)                          tCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACgatga                                                                                                                <  1:370715/141‑1 (MQ=255)                           cTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACgatgat                                                                                                               >  1:193495/1‑141 (MQ=255)                           cTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACgatgat                                                                                                               <  2:303546/141‑1 (MQ=255)                            tAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGAtt                                                                                                              <  2:204048/141‑1 (MQ=255)                              aaCTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGt                                                                                                            >  1:244510/1‑141 (MQ=255)                                   tatCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTgcaactgtagacaatcatcgtgattgtcccaacgag                                                                                                       <  1:58584‑M1/141‑37 (MQ=255)                                       aaccaacAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTg                                                                                                   >  1:188813/1‑141 (MQ=255)                                        accaacAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGc                                                                                                  <  1:767670/141‑1 (MQ=255)                                            aCAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggt                                                                                              >  2:43914‑M2/1‑137 (MQ=255)                                             cAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtg                                                                                             <  1:648858‑M2/141‑6 (MQ=255)                                              aGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTgcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgc                                                                                            <  1:441502‑M1/141‑48 (MQ=255)                                              aGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATAGTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTgg                                                                                            >  1:163972/1‑141 (MQ=255)                                                 gtgCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                         >  2:55862/1‑141 (MQ=255)                                                 gtgCCACGGACAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAACAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                         <  1:590854/141‑1 (MQ=255)                                                  tgCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                        <  1:372956/141‑1 (MQ=255)                                                  tgCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                        <  1:473973/141‑1 (MQ=255)                                                  tgCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                        >  2:325014/1‑141 (MQ=255)                                                  tgCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGAAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                        >  1:595530/1‑141 (MQ=255)                                                                 aaattGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGt                                                                         <  2:225019/141‑1 (MQ=255)                                                                  aattGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTagcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgcttttttaatttcaatacca                                                                        <  1:738873‑M1/141‑68 (MQ=255)                                                                    ttGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAt                                                                      >  1:337821/1‑141 (MQ=255)                                                                     tGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAtt                                                                     <  1:194926/141‑1 (MQ=255)                                                                        agaagCTTATATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATttgt                                                                  <  1:144811/141‑1 (MQ=255)                                                                           aacTGAGGTATTAAAATTTTAGACAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTtgttgt                                                               <  1:755664/139‑1 (MQ=255)                                                                              tGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTa                                                            >  1:751770/1‑141 (MQ=255)                                                                                agaTATTAACATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAgg                                                          >  1:692415/1‑141 (MQ=255)                                                                                   tatTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGata                                                       <  1:240037/141‑1 (MQ=255)                                                                                           ttttAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAttt                                               <  1:45324/141‑1 (MQ=255)                                                                                            tttAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTa                                              >  2:71800/1‑141 (MQ=255)                                                                                               aGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTa                                           >  2:21966/1‑141 (MQ=255)                                                                                                gAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTAt                                          <  1:768560/141‑1 (MQ=255)                                                                                                  aaaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGt                                        <  1:473564/141‑1 (MQ=255)                                                                                                   aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGtt                                       <  1:196400/141‑1 (MQ=255)                                                                                                   aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGtt                                       <  1:222145/141‑1 (MQ=255)                                                                                                   aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATGTAGTATGtt                                       <  1:693690/141‑1 (MQ=255)                                                                                                      gTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGAt                                    >  1:535051/1‑141 (MQ=255)                                                                                                          aaaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGt                                <  1:523458/141‑1 (MQ=255)                                                                                                          aaaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGt                                >  1:232848/1‑141 (MQ=255)                                                                                                              atatTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGa                            <  1:437307/141‑1 (MQ=255)                                                                                                              atatTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGAGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTTAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGa                            <  2:224418/141‑1 (MQ=255)                                                                                                                atTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACt                          >  2:69134/1‑141 (MQ=255)                                                                                                                atTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACt                          >  2:38699/1‑141 (MQ=255)                                                                                                                   tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCtaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatt                       <  1:738873‑M2/141‑76 (MQ=255)                                                                                                                   tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAg                       >  1:79069/1‑141 (MQ=255)                                                                                                                       aTTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTc                   <  2:168423/141‑1 (MQ=255)                                                                                                                       aTTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTc                   <  1:737575/141‑1 (MQ=255)                                                                                                                        ttGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCg                  <  1:10882/141‑1 (MQ=255)                                                                                                                          gAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTa                <  1:87609/141‑1 (MQ=255)                                                                                                                             aTTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCTGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAttt             <  1:624260/141‑1 (MQ=255)                                                                                                                             aTTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAttt             >  1:258303/1‑141 (MQ=255)                                                                                                                                  aaaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaa        <  2:12558/141‑1 (MQ=255)                                                                                                                                    aaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaata      >  1:734712/1‑141 (MQ=255)                                                                                                                                      gCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacact    <  1:441502‑M2/141‑95 (MQ=255)                                                                                                                                       cACCTgcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactg   <  1:648858‑M1/141‑137 (MQ=255)                                                                                                                                       cACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAAt   >  1:161164/1‑141 (MQ=255)                                                                                                                                        aCCTgcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactgt  >  2:43914‑M1/1‑4 (MQ=255)                                                                                                                                           |                                                                                                                                          CACATCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAGATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATG  >  USA300TCH1516_ALE/368640‑368915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.