| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 511377 = | 48 (1.040) | 3 (0.070) | 3/246 | NT | 6.1% | coding (42/597 nt) | recR | Recombination protein RecR |
| ? | USA300TCH1516_ALE | 511430 = | 47 (1.080) | coding (95/597 nt) | recR | Recombination protein RecR | |||||
GCAGCTACTAATGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAT > USA300TCH1516_ALE/511237‑511513 | gcagcTACTAATGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCttt > 2:67043/1‑141 (MQ=255) tctttgcttatcttcacaaatataacatggatcattttcagtaatgtgaccacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATg > 1:52179‑M1/138‑141 (MQ=255) gcTACTAATGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATg < 2:114830/141‑1 (MQ=255) cttatcttcacaaatataacatggatcattttcagtaatgtgaccacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaacagc < 1:507461‑M1/10‑5 (MQ=255) aaTGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATCTCAAAACTTATTGATAGCTTTATGAAATTg > 1:28873/1‑141 (MQ=255) aaTGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTg < 1:782592/141‑1 (MQ=255) aTGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGc < 1:82860/141‑1 (MQ=255) tGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTGTATCAAAACTTATTGATAGCTTTATGAAATTGcc > 1:730530/1‑141 (MQ=255) aaGCGATGAATAAAGCTGATGAGCTTACTCAAGACCGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAg < 1:730494/141‑1 (MQ=255) aaGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACGTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAg < 1:417272/141‑1 (MQ=255) gCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGc > 2:18359/1‑141 (MQ=255) cGATGAATAAAGCTGATGAGCTTACTCAAGAACGATTAGGTAAACATACTACAGGCTTAAACATCACTCACACGAGATAATCGCTGAATCCTGCTGCTGCTTTAAAAAAAATAATTGATAGCTTTATGAAATTGCCAGGCa > 2:48078/1‑141 (MQ=255) aGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCaaa < 1:405726/141‑1 (MQ=255) aGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTAATCATAGATGCATTCTCACGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGccg < 1:746422/141‑2 (MQ=255) cTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCaa > 1:258563/1‑141 (MQ=255) cTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCaa > 1:258477/1‑141 (MQ=255) aCTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGt < 1:683092/141‑1 (MQ=255) aCTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGt > 1:585478/1‑141 (MQ=255) gtaatgtgaccacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTgg > 2:100361‑M1/98‑141 (MQ=255) aaCGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtt > 1:584660/1‑141 (MQ=255) aaCGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtt < 1:573055/141‑1 (MQ=255) aCGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCttt < 2:209844/141‑1 (MQ=255) tttAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCa > 1:433872/1‑141 (MQ=255) gaccacatacgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCa > 1:329039‑M1/91‑141 (MQ=255) aGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAc < 1:769590/141‑1 (MQ=255) tAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt < 1:160134/141‑1 (MQ=255) aaaCATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa < 1:513608/141‑1 (MQ=255) aaaCATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa < 1:513527/141‑1 (MQ=255) cgctacaatatgttaattctctcttaacatctactaatgctttcgcaaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGa > 1:618214‑M1/82‑141 (MQ=255) tgcattCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGat < 1:100373/136‑1 (MQ=255) aTACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGata < 1:648516/141‑1 (MQ=255) aaGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaag < 1:593860/141‑1 (MQ=255) aGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGACATTGCCAGGCATTGGTCCAAAGACAGCCAAAAGTCTGGCTTTTCATCCCTTAGATATGAaaga > 1:431512/1‑141 (MQ=255) aGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaaga < 1:442070/141‑1 (MQ=255) aTCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTTTATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgtt < 1:569329/141‑1 (MQ=255) ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt > 2:130262/1‑141 (MQ=255) ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt > 1:288265/1‑141 (MQ=255) ggAATGTGATCATAGATGCATTATCCAGTACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg < 2:295786/141‑1 (MQ=255) ggAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg < 1:229455/141‑1 (MQ=255) aaaTGTGATCATAGATGCATTATCCAGAACCTATATCAAAAGTTATTGATATTTTTATGAAATTGCCAGTCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGt < 2:197296/140‑1 (MQ=255) aaTGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGtt < 2:80491/141‑1 (MQ=255) aTGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGttt > 2:233474/1‑141 (MQ=255) gtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACGGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGc > 1:642104/1‑141 (MQ=255) tGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtag > 1:46956/1‑141 (MQ=255) ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGa < 1:691432/141‑1 (MQ=255) aGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTaa > 1:141056/1‑141 (MQ=255) aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagag < 1:13442/141‑1 (MQ=255) tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAgagaga < 1:549550/141‑1 (MQ=255) atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCTTTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGaa < 1:581363/141‑1 (MQ=255) atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGaa > 1:65559/1‑141 (MQ=255) atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGaa > 1:113147/1‑141 (MQ=255) tCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTa > 2:115027/1‑141 (MQ=255) aaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACa < 2:226794/141‑1 (MQ=255) aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat > 1:761755/1‑141 (MQ=255) aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat > 1:289569/1‑141 (MQ=255) gCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAt > 2:171885/1‑141 (MQ=255) gCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAt < 2:322567/141‑1 (MQ=255) | GCAGCTACTAATGAAGCGATGAATAAAGCTGATGAGCTTACTCAAGAACGTTTAGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAT > USA300TCH1516_ALE/511237‑511513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |