| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 511377 = | 48 (1.040) | 3 (0.070) | 3/246 | NT | 6.1% | coding (42/597 nt) | recR | Recombination protein RecR |
| ? | USA300TCH1516_ALE | 511430 = | 47 (1.080) | coding (95/597 nt) | recR | Recombination protein RecR | |||||
AGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGA > USA300TCH1516_ALE/511290‑511566 | aGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAc < 1:769590/141‑1 (MQ=255) tAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt < 1:160134/141‑1 (MQ=255) aaaCATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa < 1:513608/141‑1 (MQ=255) aaaCATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTa < 1:513527/141‑1 (MQ=255) cgctacaatatgttaattctctcttaacatctactaatgctttcgcaaactgaacaacatcgtcttctttcatatctaaggTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGa > 1:618214‑M1/82‑141 (MQ=255) tgcattCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGat < 1:100373/136‑1 (MQ=255) aTACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGata < 1:648516/141‑1 (MQ=255) aaGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaag < 1:593860/141‑1 (MQ=255) aGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGACATTGCCAGGCATTGGTCCAAAGACAGCCAAAAGTCTGGCTTTTCATCCCTTAGATATGAaaga > 1:431512/1‑141 (MQ=255) aGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaaga < 1:442070/141‑1 (MQ=255) aTCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTTTATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgtt < 1:569329/141‑1 (MQ=255) ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt > 2:130262/1‑141 (MQ=255) ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt > 1:288265/1‑141 (MQ=255) ggAATGTGATCATAGATGCATTATCCAGTACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg < 2:295786/141‑1 (MQ=255) ggAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAg < 1:229455/141‑1 (MQ=255) aaaTGTGATCATAGATGCATTATCCAGAACCTATATCAAAAGTTATTGATATTTTTATGAAATTGCCAGTCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGt < 2:197296/140‑1 (MQ=255) aaTGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGtt < 2:80491/141‑1 (MQ=255) aTGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGttt > 2:233474/1‑141 (MQ=255) gtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACGGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGc > 1:642104/1‑141 (MQ=255) tGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtag > 1:46956/1‑141 (MQ=255) ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGa < 1:691432/141‑1 (MQ=255) aGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTaa > 1:141056/1‑141 (MQ=255) aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagag < 1:13442/141‑1 (MQ=255) tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAgagaga < 1:549550/141‑1 (MQ=255) atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCTTTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGaa < 1:581363/141‑1 (MQ=255) atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGaa > 1:113147/1‑141 (MQ=255) atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGaa > 1:65559/1‑141 (MQ=255) tCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTa > 2:115027/1‑141 (MQ=255) aaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACa < 2:226794/141‑1 (MQ=255) aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat > 1:761755/1‑141 (MQ=255) aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat > 1:289569/1‑141 (MQ=255) tctaaggtatgaaaagccagacgttgggctgtctttggaccaatgcctggcaatttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCGAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCg > 1:618214‑M2/61‑141 (MQ=255) gCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAt > 2:171885/1‑141 (MQ=255) gCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTAt < 2:322567/141‑1 (MQ=255) ATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGt < 2:95327‑M1/141‑1 (MQ=255) tgaaaagccagacgttgggctgtctttggaccaatgcctggcaatttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTc > 1:329039‑M2/52‑141 (MQ=255) TGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTc < 2:175196‑M1/141‑1 (MQ=255) TGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTc < 1:698382‑M1/141‑1 (MQ=255) ATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACAt > 1:239732‑M1/1‑141 (MQ=255) ccagacgttgggctgtctttggaccaatgcctggcaatttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTAc > 2:100361‑M2/45‑141 (MQ=255) aGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGa < 1:356501/141‑1 (MQ=255) aGGCATGGGTCCAAAGACAGCCCAACGCCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGa < 1:489314/141‑1 (MQ=255) ggCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGaa > 1:775666/1‑141 (MQ=255) gCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGaaa < 1:278703/141‑1 (MQ=255) tGGTCCAAAGACAGCCCAACGGCTGGCCTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATGAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGa > 1:581483/1‑141 (MQ=255) ccAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGGAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCa < 1:546118/141‑1 (MQ=255) cAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCAt > 2:128538/1‑141 (MQ=255) aGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGtt < 2:278708/141‑1 (MQ=255) gACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTta < 1:273069/141‑1 (MQ=255) cAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTtata > 2:143608/1‑141 (MQ=255) cAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTtata < 2:1860/141‑1 (MQ=255) aGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGGGGTCACATTACTGAAAATGATCCATGTTatat > 1:492179/1‑141 (MQ=255) gCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATAtt > 1:112332/1‑141 (MQ=255) gCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATAtt < 1:637682/141‑1 (MQ=255) ccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTtg < 1:233656/141‑1 (MQ=255) ccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTGGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATCAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTtg > 1:219022/1‑141 (MQ=255) gaaCGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTtgt > 1:747644/2‑141 (MQ=255) cAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTtgt < 1:45654/141‑1 (MQ=255) aaCGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTtgtg < 1:246091/141‑1 (MQ=255) gctgttcataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAg < 1:507461‑M2/131‑1 (MQ=255) ttttCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCa < 1:784885/141‑1 (MQ=255) cataCCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAaga > 1:52179‑M2/5‑141 (MQ=255) | AGGTAAACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGA > USA300TCH1516_ALE/511290‑511566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |