mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | = 3069 | 292 (0.300) | 5 (0.010) | 5/246 | NT | 3.5% | intergenic (‑395/–) | USA300HOU_RS14900/– | hypothetical protein/– |
| ? | NC_012417 | = 3118 | 0 (0.000) | intergenic (‑444/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
| * | ? | NC_012417 | = 2937 | 892 (0.930) | 29 (0.030) | 12/250 | NT | 3.2% | intergenic (‑263/–) | USA300HOU_RS14900/– | hypothetical protein/– |
| ? | NC_012417 | = 2949 | 884 (0.960) | intergenic (‑275/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
| * | ? | NC_012417 | = 1982 | 742 (0.770) | 19 (0.020) | 9/246 | NT | 2.7% | intergenic (+215/+111) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2027 | 654 (0.720) | intergenic (+260/+66) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1976 = | 753 (0.790) | 21 (0.020) | 12/246 | NT | 3.0% | intergenic (+209/+117) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2035 = | 654 (0.720) | intergenic (+268/+58) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 1954 | 774 (0.810) | 11 (0.010) | 8/244 | NT | 1.6% | intergenic (+187/+139) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2064 | 637 (0.710) | intergenic (+297/+29) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1947 = | 798 (0.830) | 14 (0.020) | 9/244 | NT | 2.0% | intergenic (+180/+146) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2073 = | 637 (0.710) | intergenic (+306/+20) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1188 = | 923 (0.960) | 6 (0.010) | 4/244 | NT | 0.71% | coding (7/192 nt) | USA300HOU_RS15665 | hypothetical protein |
| ? | NC_012417 | 1208 = | 815 (0.910) | intergenic (‑14/‑371) | USA300HOU_RS15665/USA300HOU_RS14895 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 1057 | 745 (0.780) | 4 (0.010) | 4/216 | NT | 0.59% | coding (138/192 nt) | USA300HOU_RS15665 | hypothetical protein |
| ? | NC_012417 | = 1103 | 737 (0.930) | coding (92/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||
| * | ? | CP000731 | 20439 = | 95 (0.980) | 3 (0.030) | 3/248 | NT | 3.4% | coding (632/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase |
| ? | CP000731 | 20463 = | 81 (0.880) | coding (608/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase | |||||
| * | ? | CP000731 | 19503 = | 114 (1.180) | 4 (0.040) | 4/250 | NT | 3.9% | intergenic (‑545/+893) | USA300HOU_pUSA300HOUMR0024/USA300HOU_pUSA300HOUMR0027 | bacitracin ABC ATP binding cassette transporter, ABC protein/IS431mec transposase |
| ? | CP000731 | 19546 = | 89 (0.950) | intergenic (‑588/+850) | USA300HOU_pUSA300HOUMR0024/USA300HOU_pUSA300HOUMR0027 | bacitracin ABC ATP binding cassette transporter, ABC protein/IS431mec transposase | |||||