| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1183556 | 208 (1.020) | 18 (0.100) | 11/140 | NT | 9.0% | intergenic (+67/+42) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase |
| ? | USA300TCH1516_ALE | = 1183574 | 181 (1.020) | intergenic (+85/+24) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase | |||||
TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1183457‑1183556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactacgaGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC < USA300TCH1516_ALE/1183574‑1183485 TCATGGAAACAACTAAATGATATTGTACGTTAAGCCAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG > 1:1891487/1‑91TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG > 1:2917903/1‑91TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG < 2:1654011/91‑1TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG > 1:2258262/1‑91 CATGGAAGCAACTAAATGATATTGTACGTTAAGAGAAATAATTTGAAGATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA < 2:1697290/91‑1 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAATGA > 1:1210553/1‑91 ATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGAC > 1:3048968/1‑91 ATGGAAACAACTAAATGATATTGTACCTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGAC > 2:2244203/1‑91 ATGGAAACAACTAAATGATATTGTACATTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGAC > 2:2243865/1‑91 TGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAATAGACA > 2:3648222/1‑91 TGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACA > 2:1096672/1‑91 TGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACA > 2:202031/1‑91 TGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACA < 2:3615013/91‑1 GGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACAC < 2:1572624/91‑1 GGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACAC > 1:357184/1‑91 GAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACT < 2:2662/91‑1 AAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTA < 2:664359/91‑1 AAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTA < 1:3211126/91‑1 AAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTA < 1:3214041/91‑1 AACAACTAAATGATATTGTACGTTAAGACAATTAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTAC > 2:3024678/1‑91 AACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTAC > 1:187971/1‑91 ACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACG > 2:2192638/1‑91 ACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACG < 1:193690/91‑1 GATATTGTATGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAA < 1:1060935/91‑1 TGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCAT < 2:1281955/91‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTTTATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTT < 1:3371265/91‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGCGCATGAAAATGCATCTTTT < 2:3744382/91‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTT < 2:1379898/91‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTT < 1:426705/91‑1 TAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCG < 2:1848366/91‑1 AAGACAAATAACTTGAAAATGATCTACTTATATTAGCTTAAGAAAGTAAGTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGT < 2:3009688/91‑1 AAGACAAATAACTTGAAAATGACATACTTATATTAGCTTAAGAAAGTAACTGTAAAAAATACACTACGAGCATGAAAATGCATCTTTTCGT < 2:3009570/91‑1 AAGACAAATAAATTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGT < 2:1749920/91‑1 AGACAAATAATTTGAAAATGATTTACTTATATTAGCGTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTA < 2:203471/91‑1 GACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAG < 2:3715771/91‑1 GACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAG < 2:1989975/91‑1 ACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGT < 2:2550025/91‑1 CAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:2249657/91‑1 ATAATTATAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTTCGAGCATGAAAATGCATCTTTTCGTAGTGTCT < 2:1328705/91‑1 AAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACA < 1:1724119/91‑1 AAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACA < 1:2186971/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT < 2:1164211/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT < 2:2985188/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT < 2:721865/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT < 2:721810/91‑1 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT < 1:3285410/91‑1 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 1:2866132/1‑91 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 2:1137502/1‑91 ACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGT < 1:1284244/91‑1 ACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGT > 2:185189/1‑91 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC < 2:798597/91‑1 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC > 2:1964035/1‑91 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC > 1:2486079/1‑91 TACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCT < 1:734437/91‑1 ACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTT > 2:2695084/1‑91 ACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTT < 2:1248483/91‑1 ACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTT > 1:1126738/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC > 2:2327610/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC > 1:58570/1‑91 TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1183457‑1183556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactacgaGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC < USA300TCH1516_ALE/1183574‑1183485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |