| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1732970 | 145 (0.710) | 10 (0.060) | 6/136 | NT | 7.0% | intergenic (+156/+81) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1733003 | 141 (0.820) | intergenic (+189/+48) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732870‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < USA300TCH1516_ALE/1733003‑1732914 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 1:1841474/91‑1GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 1:1214737/91‑1GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG > 2:850558/1‑91 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA > 2:3604943/1‑91 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA > 2:3074255/1‑91 AACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAA < 2:3227811/91‑1 AACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAA < 2:3227370/91‑1 ACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAA < 2:770251/91‑1 ACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAA < 1:3206009/91‑1 CAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAG > 2:924857/1‑91 AGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGC > 1:1251772/1‑91 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC > 1:327793/1‑91 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 2:227766/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 2:227291/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 2:227170/91‑1 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC > 1:528901/1‑91 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC > 2:1587473/1‑91 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC < 1:1142304/91‑1 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC < 1:1142352/91‑1 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC < 1:1143458/91‑1 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC > 1:3263196/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC > 2:934036/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC < 2:2856533/91‑1 ATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCTCCCCATCAAATAGTCACTTACACTGTGTAAAG < 2:3891244/91‑1 ATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAG < 2:3889581/91‑1 TCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCGAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT < 1:3819657/91‑1 TCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT < 2:2401931/91‑1 CATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTT < 1:2841400/91‑1 CATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTT < 2:3105912/91‑1 ATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTG < 2:2586558/91‑1 TTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGA < 2:1787200/91‑1 TTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGA < 1:3486683/91‑1 ATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG < 2:3751779/91‑1 TGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCA > 1:2170276/1‑91 GAAAGCGTCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 2:3514399/91‑1 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT > 2:270906/1‑91 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 1:1110891/91‑1 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 1:2452860/91‑1 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 1:991181/91‑1 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 1:2809280/91‑1 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATT > 2:562491/1‑91 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATT > 1:3198603/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA > 1:1801037/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA > 2:2824197/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA > 2:2634241/1‑91 AGCGCCCTATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTTAATCATTAC < 1:1970909/91‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 2:2398613/91‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 2:3854218/91‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 1:458778/91‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 1:743110/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATCTTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT > 1:299355/1‑91 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 2:1872995/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 2:3800331/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 2:1326447/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT > 2:1169632/1‑91 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTGTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 2:2539411/91‑1 CGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGAATTAGAATTTTAAGTGAATTTGAATCATTACTA > 2:1684316/1‑91 tCCCCATCAAATAAACACTTACACAGCGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA > 2:2237138/2‑91 GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA > 1:1798684/1‑91 GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA > 1:56490/1‑91 GCCCCATCAAATAAACACTTACACAGAGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA > 2:2236741/1‑91 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA > 1:1069801/1‑91 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA < 1:1838946/91‑1 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA < 1:1838960/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA > 1:1755984/1‑91 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 1:1420122/91‑1 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAAT < 1:3526465/91‑1 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAAT < 2:1044543/91‑1 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 1:2735795/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 1:2877480/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 2:652332/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < 1:162888/91‑1 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < 1:162887/91‑1 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 2:1222490/1‑91 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732870‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < USA300TCH1516_ALE/1733003‑1732914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |