| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1911750 = | 135 (0.660) | 14 (0.070) | 5/148 | NT | 10.1% | coding (729/825 nt) | USA300TCH1516_01771 | hypothetical protein |
| ? | USA300TCH1516_ALE | 2318662 = | NA (NA) | coding (42/300 nt) | USA300HOU_RS12765 | hypothetical protein | |||||
TACAAATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1911845‑1911750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaatAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTCA > USA300TCH1516_ALE/2318662‑2318751 TACAAATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAA > 1:1052647/1‑91TACAAATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAA > 1:830100/1‑91 CAAATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACA > 1:3632357/1‑91 CAAATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACA < 1:2437780/91‑1 aaAACCGAAGGTATTTTGAATCATTATTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAAT < 2:2659733/89‑1 ATAACGGATGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAAT < 2:3460925/91‑1 ATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAATACAAAT < 1:3075237/91‑1 ATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAGACAAAT < 1:3076075/91‑1 ATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAAT > 1:1678538/1‑91 TTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTTGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCT < 2:3420909/91‑1 TTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTTGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCT < 2:2099770/91‑1 GAATCATTGTTAAAAATGGGATTAATGTTCTAGTATCTGTTGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAAT < 1:858273/91‑1 AATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATT < 2:554184/91‑1 ATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTTGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTT < 2:3235921/91‑1 ATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTTGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTT < 2:1258993/91‑1 TCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTG < 2:2154724/91‑1 CATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTTGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTGT < 1:237575/91‑1 CATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTTGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTGT < 1:3630478/91‑1 ATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTGTT < 1:3488947/91‑1 TGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTGTTTT < 1:3242510/91‑1 GTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTGTTTTA < 1:2068429/91‑1 GTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTGTTTTA < 1:2068996/91‑1 GTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAATAGCGACAAATTCTCAATTTGTTTTA < 1:2068925/91‑1 actAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCGATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATG < 2:3411663/88‑1 ACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATG > 2:2009127/1‑91 ACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATG > 2:3615740/1‑91 ACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATG < 1:2761719/91‑1 ACAAATAGCGACAAATTCTCAATTTGTTTTACCCTATGACCTATTTCAAAACCCAACAGATACTAGACCTTTAATTCCAGTTTTAACAATG > 2:3018057/1‑91 CAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGA > 1:3835597/1‑91 CAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGA > 1:201188/1‑91 CAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGA > 1:2815321/1‑91 CAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGA > 1:2815306/1‑91 AAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTCGAACTCTACTTCCATTTTTAACAATGAT > 2:1126443/1‑91 AAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGAT < 1:828616/91‑1 AAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGAT < 1:828601/91‑1 AAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGAT > 1:1454259/1‑91 AAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGAT > 1:137649/1‑91 AAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGAT > 2:484224/1‑91 AAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGAT > 1:1032073/1‑91 AATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATCTCAAAACCCAACAGATACTAGAACTTAAATTCCATTTTTAACAATGATT > 2:3001285/1‑91 ATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTC > 2:2056343/1‑91 ATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTC > 2:1486881/1‑91 ATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTC > 1:2361162/1‑91 ATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTC > 1:3308906/1‑91 ATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTC > 1:2361932/1‑91 TAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTCA < 1:708855/91‑1 TACAAATAACCGAAGGTATTTTGAATCATTGTTAAAAATGGAATTAAAGTTCTAGTATCTGTCGGGTTTTGAAATAGGTCATAGGATAAAACAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1911845‑1911750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaatAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTCA > USA300TCH1516_ALE/2318662‑2318751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |