| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2322819 = | 156 (0.770) | 11 (0.060) | 7/142 | NT | 7.5% | intergenic (‑259/+48) | opuD_2/USA300HOU_RS11850 | Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein |
| ? | USA300TCH1516_ALE | 2322856 = | 132 (0.730) | intergenic (‑296/+11) | opuD_2/USA300HOU_RS11850 | Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein | |||||
CAATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2322917‑2322819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGAT > USA300TCH1516_ALE/2322856‑2322945 CAATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATA < 2:2325614/91‑1CAATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATA > 2:2727900/1‑91CAATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATA > 1:1859680/1‑91CAATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGACGCCTTATGCAGAAAATACTGTATA > 1:3668177/1‑91 AATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAG > 2:905957/1‑91 AATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAG > 2:3541288/1‑91 ATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGG < 2:3571153/91‑1 TTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGC > 2:1299739/1‑91 TTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGC < 2:3479534/91‑1 TGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCG < 1:1899477/91‑1 GTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGA < 1:1820759/91‑1 tgGGAGAAACAGTCAAGGATTGGAATATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCTGAAAATACTGTATGGGCGAC < 2:758631/89‑1 TTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGAC < 1:360334/91‑1 TTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGAC < 1:372534/91‑1 TTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGAC < 2:940229/91‑1 TTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGAC < 1:3396574/91‑1 TTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGAC < 2:3551387/91‑1 TTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTGATGCAGAAAATACTGTATATGCGAC > 1:3672582/1‑91 TGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACT > 2:90948/1‑91 TGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACT > 1:1228182/1‑91 TGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACT < 1:2157334/91‑1 TGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACT > 1:3816062/1‑91 TGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACT > 1:3816259/1‑91 GGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT < 2:1362050/91‑1 GGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT < 2:1362017/91‑1 GTCGCCTTATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAA > 1:2504150/1‑91 CGCCTTATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACA > 1:3568624/1‑91 CGCCTTATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACA > 1:3122574/1‑91 TTATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTG > 1:1310485/1‑91 TTATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTG > 1:1312972/1‑91 TATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGA > 1:748261/1‑91 TATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGA > 2:920674/1‑91 ATGCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAT > 1:820354/1‑91 GCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGT > 2:2509083/1‑91 GCAGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGT > 2:2973129/1‑91 AGAAAATACTGTATAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGC > 2:3592629/1‑91 GCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCA < 1:1410266/91‑1 CGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAG < 1:3836147/91‑1 CGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGATTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAG < 1:3335371/91‑1 actcTTACTTACTAAACTATATATTAATTACTAATTTCCCAATCATTGATTGTTTTTCTAACAATTGATGTGCTTGATATAAGTTTTCAGG > 1:647100/5‑91 GACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGG > 2:3057037/1‑91 GACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGG > 2:3057057/1‑91 GACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGG < 1:365554/91‑1 GACTTTACTTACAAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTAAATCCAACAATTGATGTGCTTGATATAAGTTTTCAGG > 2:2139589/1‑91 ACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGT > 2:3297320/1‑91 ACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGT < 2:18963/91‑1 CTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATAT‑AGTTTTCAGGTGA > 2:595950/1‑91 TTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGGTGTGCTTGATATAAGTTTTCAGGTGA < 2:2243615/91‑1 TTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGA < 1:3486553/91‑1 TTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGA < 1:3495130/91‑1 TTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGA < 1:3624017/91‑1 TTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGA < 1:1629415/91‑1 TTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGAT < 1:3240962/91‑1 TTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGAT > 1:2761533/1‑91 TTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGAT > 1:2523568/1‑91 TTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGAT > 2:1705698/1‑91 CAATTGTTGGAAAAACAATCAATGATTGGAAAATTAGTAATTAATATATAGATTAGTAAGTAAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2322917‑2322819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGAT > USA300TCH1516_ALE/2322856‑2322945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |