BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2322819 =	156 (0.770)	11 (0.060)	7/142	NT	7.5%	intergenic (‑259/+48)	opuD_2/USA300HOU_RS11850	Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein
*	?	USA300TCH1516_ALE	2322856 =	132 (0.730)	11 (0.060)	7/142	NT	7.5%	intergenic (‑296/+11)	opuD_2/USA300HOU_RS11850	Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein

Only 100 of 210 total aligned reads displayed.

GCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGATA  >  USA300TCH1516_ALE/2322767‑2322946

gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                                                           <  2:223454/91‑1 (MQ=255)

gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                                                           <  1:404066/91‑1 (MQ=255)

gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                                                           <  1:579602/91‑1 (MQ=255)

 cAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTttac                                                                                          <  1:2081368/91‑1 (MQ=255)

   aaGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTttactt                                                                                        >  2:3831609/1‑91 (MQ=255)

      ttGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTtacttact                                                                                     <  1:2821216/91‑1 (MQ=255)

       tGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTa                                                                                    >  2:90212/1‑91 (MQ=255)

       tGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTa                                                                                    >  1:522854/1‑91 (MQ=255)

           atatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCt                                                                                >  1:2763650/1‑91 (MQ=255)

            tatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCta                                                                               <  1:792369/91‑1 (MQ=255)

            tatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCta                                                                               <  2:3325938/91‑1 (MQ=255)

               ttCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCtatat                                                                            >  1:2658166/1‑91 (MQ=255)

                   gTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATatta                                                                        >  2:1285620/1‑91 (MQ=255)

                    tttAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaa                                                                       >  2:3733321/1‑91 (MQ=255)

                     ttAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaat                                                                      <  2:3559974/91‑1 (MQ=255)

                      tAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatt                                                                     <  2:1776148/91‑1 (MQ=255)

                      tAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatt                                                                     <  2:2418449/91‑1 (MQ=255)

                       agtaTCAATAGTCGCTAGCCACAAAAAATAAGGCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatta                                                                    <  2:1124586/88‑1 (MQ=255)

                       aGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatta                                                                    >  2:2691815/1‑91 (MQ=255)

                       aGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatta                                                                    <  1:358735/91‑1 (MQ=255)

                        gAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTAc                                                                   >  2:2479412/1‑91 (MQ=255)

                         aaTCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACt                                                                  <  1:2008116/91‑1 (MQ=255)

                           tCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTaa                                                                >  1:3725057/1‑91 (MQ=255)

                             aaTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtt                                                              >  1:1166143/1‑91 (MQ=255)

                             aaTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtt                                                              <  2:1676417/91‑1 (MQ=255)

                              aTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAttt                                                             <  1:694222/91‑1 (MQ=255)

                               tAGTCGCTAGACAAAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtttt                                                            <  2:1731641/91‑1 (MQ=255)

                                 gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                                                          >  2:2266583/1‑91 (MQ=255)

                                 gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                                                          <  1:1776017/91‑1 (MQ=255)

                                 gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                                                          >  1:2766899/1‑91 (MQ=255)

                                 gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGAATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                                                          <  2:47642/91‑1 (MQ=255)

                                  tCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCa                                                         <  2:1456823/91‑1 (MQ=255)

                                   cGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCaa                                                        >  1:2874876/1‑91 (MQ=255)

                                    gCTAGACACAACAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGCCTTAACTTACTAGTCTTAATATGAATTACAAATATTCCAAt                                                       >  2:1573226/1‑91 (MQ=255)

                                     cTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATc                                                      >  2:6629/1‑91 (MQ=255)

                                       aGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCat                                                    <  2:86134/91‑1 (MQ=255)

                                        gACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCatt                                                   <  1:2750686/91‑1 (MQ=255)

                                          cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                                 >  1:2464960/1‑91 (MQ=255)

                                          cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                                 <  2:32528/91‑1 (MQ=255)

                                          cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                                 >  1:2288645/1‑91 (MQ=255)

                                          cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                                 <  2:391971/91‑1 (MQ=255)

                                          cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                                 <  2:1201322/91‑1 (MQ=255)

                                          cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                                 <  2:1402979/91‑1 (MQ=255)

                                          cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                                 >  2:1678676/1‑91 (MQ=255)

                                           acaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgat                                                <  2:200348/91‑1 (MQ=255)

                                             aaaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgattg                                              <  2:1955936/91‑1 (MQ=255)

                                             aaaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgattg                                              <  1:2967007/91‑1 (MQ=255)

                                              aaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTGCTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGt                                             <  1:3134766/91‑1 (MQ=255)

                                              aaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGt                                             <  1:3345303/91‑1 (MQ=255)

                                                aaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGttt                                           <  1:1449977/91‑1 (MQ=255)

                                                   tAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTc                                        >  2:1752645/1‑91 (MQ=255)

                                                    AAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTcc                                       <  2:1362050‑M1/91‑1 (MQ=255)

                                                     AGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCca                                      >  2:90948‑M1/1‑91 (MQ=255)

                                                     AGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCca                                      <  1:2157334‑M1/91‑1 (MQ=255)

                                                     AGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCca                                      >  1:3816062‑M1/1‑91 (MQ=255)

                                                      GTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaa                                     <  1:360334‑M1/91‑1 (MQ=255)

                                                      GTCGCCCATACAGTATTTTCAGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATATTCCAATCCTTGACTGTTTctccca                                     <  2:758631‑M1/91‑3 (MQ=255)

                                                       TCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaac                                    <  1:1820759‑M1/91‑1 (MQ=255)

                                                        cgccttatgcagaaaatactgtataggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaaca                                   >  1:3122574‑M2/34‑91 (MQ=255)

                                                        CGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaaca                                   <  1:1899477‑M1/91‑1 (MQ=255)

                                                         GCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaacaa                                  <  2:3479534‑M1/91‑1 (MQ=255)

                                                           CTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAAtt                                >  2:3541288‑M1/1‑91 (MQ=255)

                                                            ttatgcagaaaatactgtataggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTg                               >  1:1310485‑M2/30‑91 (MQ=255)

                                                            TATACAGTATTTTCTGCATAAGGCGTCTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTg                               >  1:3668177‑M1/1‑91 (MQ=255)

                                                            TATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTg                               <  2:2325614‑M1/91‑1 (MQ=255)

                                                             tatgcagaaaatactgtataggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGa                              >  1:748261‑M2/29‑91 (MQ=255)

                                                             ataCAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGa                              <  2:1337033/91‑1 (MQ=255)

                                                              taCAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAt                             <  2:1034621/91‑1 (MQ=255)

                                                                gcagaaaatactgtataggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                           >  2:2509083‑M2/26‑91 (MQ=255)

                                                                gcagaaaatactgtataggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                           >  2:2973129‑M2/26‑91 (MQ=255)

                                                                cAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                           >  2:2785596/1‑91 (MQ=255)

                                                                cAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                           >  1:1214977/1‑91 (MQ=255)

                                                                cAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                           >  1:1945416/1‑91 (MQ=255)

                                                                cAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                           >  1:3749291/1‑91 (MQ=255)

                                                                  gTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGc                         <  1:84275/91‑1 (MQ=255)

                                                                  agaaaatactgtataggcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGc                         >  2:3592629‑M2/24‑91 (MQ=255)

                                                                   tATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCt                        >  1:933040/1‑91 (MQ=255)

                                                                    aTTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCtt                       >  1:3199084/1‑91 (MQ=255)

                                                                      tttCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGa                     <  1:1267340/91‑1 (MQ=255)

                                                                       ttCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGat                    <  1:3603386/91‑1 (MQ=255)

                                                                        tCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGata                   <  1:3567340/91‑1 (MQ=255)

                                                                         cTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGatat                  >  1:3916958/1‑91 (MQ=255)

                                                                         cTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGatat                  <  1:3242321/91‑1 (MQ=255)

                                                                          tGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGAtata                 >  1:2319475/1‑91 (MQ=255)

                                                                           gCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATaa                >  2:2387841/1‑91 (MQ=255)

                                                                            cATAAGGCGTCTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGCTGTGCTTGATATCAg               <  2:1270353/91‑1 (MQ=255)

                                                                              tAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGtt             >  2:72548/1‑91 (MQ=255)

                                                                                  gcgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCa         <  1:1410266‑M2/84‑1 (MQ=255)

                                                                                   cgacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAg        <  1:3836147‑M2/85‑1 (MQ=255)

                                                                                    gacttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAgg       >  2:3057057‑M2/6‑91 (MQ=255)

                                                                                    gacttTACTTACAAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTAAATCCAACAATTGATGTGCTTGATATAAGTTTTCAgg       >  2:2139589‑M2/6‑91 (MQ=255)

                                                                                    actctTACTTACTAAACTATATATTAATTACTAATTTCCCAATCATTGATTGTTTTTCTAACAATTGATGTGCTTGATATAAGTTTTCAgg       >  1:647100‑M2/6‑91 (MQ=255)

                                                                                     acttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGt      <  2:18963‑M2/87‑1 (MQ=255)

                                                                                     acttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGt      >  2:3297320‑M2/5‑91 (MQ=255)

                                                                                      cttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATAT‑AGTTTTCAGGTGa    >  2:595950‑M2/4‑91 (MQ=255)

                                                                                       ttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGGTGTGCTTGATATAAGTTTTCAGGTGa    <  2:2243615‑M2/89‑1 (MQ=255)

                                                                                       ttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGa    <  1:3486553‑M2/89‑1 (MQ=255)

                                                                                       ttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGa    <  1:3624017‑M2/89‑1 (MQ=255)

                                                                                       ttTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGa    <  1:1629415‑M2/89‑1 (MQ=255)

                                                                                        tTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGAt   >  1:2523568‑M2/2‑91 (MQ=255)

GCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTTTTCAGGTGATA  >  USA300TCH1516_ALE/2322767‑2322946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.