| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2378465 = | 234 (1.150) | 13 (0.070) | 7/140 | NT | 6.9% | intergenic (+324/+95) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein |
| ? | USA300TCH1516_ALE | 2378512 = | 149 (0.840) | intergenic (+371/+48) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein | |||||
TCTAGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2378564‑2378465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACT > USA300TCH1516_ALE/2378512‑2378601 TCTAGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAA > 2:1489785/1‑91TCTAGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAA < 1:957309/91‑1 CTAGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCGCAATATGTAAATGTATATTGT‑GAAA > 1:3683200/1‑91 CTAGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAA > 2:1181489/1‑91 TAGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAA > 2:2182242/1‑91 AGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAG < 1:3162612/91‑1 GTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGG > 2:2990768/1‑91 GTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGG > 1:2534094/1‑91 GTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGG > 2:2995451/1‑91 GTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGG < 1:1832470/91‑1 TTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGG < 1:2312104/91‑1 TTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGG < 1:1935330/91‑1 TTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGG < 1:947523/91‑1 TTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGG > 2:372494/1‑91 TTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGG < 1:3393523/91‑1 TTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGG < 2:766036/91‑1 TTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGG < 1:943459/91‑1 TACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGGGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGG < 2:3102582/91‑1 TACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGG < 2:2014915/91‑1 TACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGG > 1:3937222/1‑91 TACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGG < 2:2014863/91‑1 TACACATTTGAAAATAAAATCCATTTTAGTATTCGTACAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGG > 1:3336411/1‑91 ACACATTTGAAAATAACATCCATGTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGC < 2:3030773/91‑1 ACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGC < 2:1739886/91‑1 ACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGC < 1:1213470/91‑1 ACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGC < 2:94239/91‑1 CACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCT > 2:1478208/1‑91 CACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCT < 2:296960/91‑1 CACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCT > 1:23145/1‑91 CACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCT < 1:1561266/91‑1 CACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCT < 1:60125/91‑1 AGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATG > 1:3904413/1‑91 GCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGT > 1:1846597/1‑91 CTTTACCACAATATGTGAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACT > 2:441623/1‑91 CTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACT > 1:3533437/1‑91 TTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTA > 2:2937567/1‑91 CCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACA > 2:1932394/1‑91 CCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTTAAATTGATTTTATTTTCAAATGTGTAAACAAGACA > 2:1173954/1‑91 CCACAATATGGAAATGTATATTGT‑GAAAAGGGGGCGCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACA > 2:1174008/1‑91 CACAATATGTAAATGTATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACA > 1:1195349/1‑91 CACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAA > 1:80584/1‑91 CACAATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAA > 2:309446/1‑91 AATATGTAAATGTATATTGT‑GAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACA > 2:1331799/1‑91 ATGTAAATGTATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACT > 2:614697/1‑91 AAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAAT > 2:2995715/1‑91 AAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAAT < 2:1380421/91‑1 AAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAAT > 2:1348222/1‑91 AAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATA > 2:401834/1‑91 AAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATA > 1:2867683/1‑91 GGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATG > 1:2961766/1‑91 GGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATG < 1:860543/91‑1 GGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGA > 1:2294960/1‑91 GGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGA > 1:1889832/1‑91 GGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGA < 1:3090938/91‑1 GGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGA < 1:3900603/91‑1 GGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGAT < 1:3401901/91‑1 GGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGAT > 1:871204/1‑91 GCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATA > 1:1481830/1‑91 CTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATAC < 2:174901/91‑1 CTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATAC < 2:174868/91‑1 TCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACT < 2:2028357/91‑1 TCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACT > 2:3534871/1‑91 TCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACT > 2:532445/1‑91 TCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACT > 2:532526/1‑91 TCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACT > 2:115144/1‑91 TCTAGTTTACACATTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGT‑GAAAAGGGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2378564‑2378465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACT > USA300TCH1516_ALE/2378512‑2378601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |